Conservation of cofitness between Psyr_4754 and Psyr_1547 in Pseudomonas syringae pv. syringae B728a

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 1.0 Psyr_1547 glycine cleavage system transcriptional repressor 0.28 6
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 1.00 Psyr_1547 glycine cleavage system transcriptional repressor low > 86
Pseudomonas stutzeri RCH2 0.73 Psest_0255 RNA methyltransferase, RsmD family 0.86 Psest_1514 Glycine cleavage system regulatory protein — —
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_4579 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.91 Pf6N2E2_2748 Glycine cleavage system transcriptional antiactivator GcvR low > 103
Pseudomonas sp. S08-1 0.72 OH686_14220 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.80 OH686_19210 Glycine cleavage system transcriptional antiactivator GcvR low > 80
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_13320 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.92 AO356_04535 glycine cleavage system protein R low > 104
Pseudomonas sp. RS175 0.71 PFR28_04262 Ribosomal RNA small subunit methyltransferase D 0.91 PFR28_00698 Glycine cleavage system transcriptional repressor low > 88
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_2320 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.92 Pf1N1B4_3331 Glycine cleavage system transcriptional antiactivator GcvR — —
Pseudomonas fluorescens FW300-N2E3 0.71 AO353_08265 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.92 AO353_17665 glycine cleavage system protein R low > 101
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.91 PFLU_RS07270 glycine cleavage system protein R 0.25 46
Pseudomonas fluorescens SBW25 0.71 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.91 PFLU_RS07270 glycine cleavage system protein R low > 109
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_990 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.91 PfGW456L13_4508 Glycine cleavage system transcriptional antiactivator GcvR low > 87
Pseudomonas simiae WCS417 0.70 PS417_26825 16S rRNA methyltransferase 0.92 PS417_07160 glycine cleavage system protein R — —
Pseudomonas putida KT2440 0.68 PP_5114 putative adenine methyltransferase 0.81 PP_1236 putative Glycine cleavage system transcriptional repressor low > 96
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_00238 Ribosomal RNA small subunit methyltransferase D 0.14 OHPLBJKB_01250 Glycine cleavage system transcriptional repressor low > 73
Rahnella sp. WP5 0.48 EX31_RS14835 16S rRNA (guanine(966)-N(2))-methyltransferase 0.14 EX31_RS22735 glycine cleavage system transcriptional repressor low > 89
Escherichia fergusonii Becca 0.48 EFB2_00351 Ribosomal RNA small subunit methyltransferase D 0.14 EFB2_01407 Glycine cleavage system transcriptional repressor low > 86
Escherichia coli ECOR38 0.48 HEPCGN_15525 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.14 HEPCGN_21080 gcvR glycine cleavage system transcriptional repressor low > 87
Escherichia coli Nissle 1917 0.48 ECOLIN_RS19815 16S rRNA (guanine(966)-N(2))-methyltransferase 0.14 ECOLIN_RS14150 glycine cleavage system transcriptional repressor low > 55
Escherichia coli BW25113 0.48 b3465 yhhF predicted methyltransferase (NCBI) 0.14 b2479 gcvR transcriptional regulation of gcv operon (VIMSS) low > 76
Escherichia coli ECOR27 0.48 NOLOHH_08500 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.14 NOLOHH_13570 gcvR glycine cleavage system transcriptional repressor low > 75
Escherichia coli ECRC62 0.48 BNILDI_03015 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.14 BNILDI_12380 gcvR glycine cleavage system transcriptional repressor low > 75
Escherichia coli ECRC101 0.48 MCAODC_07225 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.14 MCAODC_12440 gcvR glycine cleavage system transcriptional repressor low > 87
Escherichia coli ECRC99 0.48 KEDOAH_11445 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.14 KEDOAH_06310 gcvR glycine cleavage system transcriptional repressor — —
Escherichia coli ECRC98 0.48 JDDGAC_20325 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.14 JDDGAC_25855 gcvR glycine cleavage system transcriptional repressor low > 86
Escherichia coli ECRC100 0.48 OKFHMN_16695 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.14 OKFHMN_21910 gcvR glycine cleavage system transcriptional repressor low > 80
Escherichia coli BL21 0.48 ECD_03314 16S rRNA m(2)G966 methyltransferase, SAM-dependent 0.14 ECD_02371 transcriptional repressor, regulatory protein accessory to GcvA low > 61
Escherichia coli ECRC102 0.48 NIAGMN_14465 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.14 NIAGMN_19680 gcvR glycine cleavage system transcriptional repressor — —
Shewanella sp. ANA-3 0.46 Shewana3_3973 putative methyltransferase (RefSeq) 0.14 Shewana3_1655 glycine cleavage system transcriptional repressor, putative (RefSeq) low > 73
Erwinia tracheiphila SCR3 0.45 LU632_RS19285 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.14 LU632_RS08320 glycine cleavage system transcriptional repressor low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF540 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) 0.13 GFF2179 Glycine cleavage system transcriptional antiactivator GcvR low > 78
Shewanella loihica PV-4 0.44 Shew_3607 putative methyltransferase (RefSeq) 0.15 Shew_1847 amino acid-binding ACT domain-containing protein (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.44 CSW01_00740 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.15 CSW01_10760 glycine cleavage system transcriptional regulator low > 62
Enterobacter sp. TBS_079 0.44 MPMX20_04342 Ribosomal RNA small subunit methyltransferase D 0.14 MPMX20_03341 Glycine cleavage system transcriptional repressor low > 85
Shewanella oneidensis MR-1 0.43 SO4587 conserved hypothetical protein TIGR00095 (NCBI ptt file) 0.14 SO1878 glycine cleavage system transcriptional repressor, putative (NCBI ptt file) low > 76
Enterobacter asburiae PDN3 0.43 EX28DRAFT_4299 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.15 EX28DRAFT_0181 Glycine cleavage system regulatory protein low > 76
Shewanella amazonensis SB2B 0.42 Sama_3469 hypothetical protein (RefSeq) 0.14 Sama_1909 glycine cleavage system transcriptional repressor, putative (RefSeq) 0.29 60
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS19990 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.29 ABZR86_RS00780 glycine cleavage system protein R low > 74
Rhodanobacter denitrificans MT42 0.42 LRK55_RS13080 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.31 LRK55_RS14795 glycine cleavage system protein R low > 63
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS13340 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.31 LRK54_RS15080 glycine cleavage system protein R low > 59

Not shown: 44 genomes with orthologs for Psyr_4754 only; 2 genomes with orthologs for Psyr_1547 only