| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_0227 | | gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase | 1.0 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.31 | 9 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_0227 | | gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase | 1.00 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Pseudomonas fluorescens FW300-N2E3 | 0.91 | AO353_09195 | | aldehyde dehydrogenase | 0.97 | AO353_14220 | | ribosomal large subunit pseudouridine synthase D | low | > 101 |
| Pseudomonas fluorescens FW300-N2C3 | 0.91 | AO356_12580 | | gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) | 0.96 | AO356_15925 | | ribosomal large subunit pseudouridine synthase D | 0.32 | 50 |
| Pseudomonas fluorescens FW300-N1B4 | 0.91 | Pf1N1B4_2132 | | Aldehyde dehydrogenase (EC 1.2.1.3) | 0.93 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.90 | Pf6N2E2_4383 | | gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) | 0.92 | Pf6N2E2_5127 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pseudomonas sp. RS175 | 0.90 | PFR28_04407 | | NADP/NAD-dependent aldehyde dehydrogenase PuuC | 0.92 | PFR28_03748 | | Ribosomal large subunit pseudouridine synthase D | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.90 | PFLU_RS29420 | | aldehyde dehydrogenase | 0.96 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.90 | PFLU_RS29420 | | aldehyde dehydrogenase | 0.96 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 109 |
| Pseudomonas fluorescens GW456-L13 | 0.90 | PfGW456L13_805 | | gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) | 0.92 | PfGW456L13_1493 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pseudomonas simiae WCS417 | 0.89 | PS417_27745 | | gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) | 0.96 | PS417_03820 | | ribosomal large subunit pseudouridine synthase D | — | — |
| Pseudomonas putida KT2440 | 0.87 | PP_5278 | | 4-guanidinobutyraldehyde dehydrogenase | 0.86 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | — | — |
| Pseudomonas sp. S08-1 | 0.85 | OH686_13645 | | Aldehyde dehydrogenase | 0.83 | OH686_16410 | | LSU rRNA pseudouridine(1911/1915/1917) synthase | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.85 | Psest_4305 | | NAD-dependent aldehyde dehydrogenases | 0.86 | Psest_0709 | | pseudouridine synthase, RluA family | low | > 67 |
| Shewanella sp. ANA-3 | 0.76 | Shewana3_3105 | | aldehyde dehydrogenase (acceptor) (RefSeq) | 0.56 | Shewana3_3171 | | ribosomal large subunit pseudouridine synthase D (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.75 | Sama_2648 | | aldehyde dehydrogenase (RefSeq) | 0.55 | Sama_2605 | | pseudouridylate synthase (RefSeq) | — | — |
| Shewanella loihica PV-4 | 0.74 | Shew_0967 | | aldehyde dehydrogenase (RefSeq) | 0.55 | Shew_2950 | | RluA family pseudouridine synthase (RefSeq) | low | > 60 |
| Marinobacter adhaerens HP15 | 0.72 | HP15_943 | | aldehyde dehydrogenase family protein | 0.60 | HP15_527 | | pseudouridine synthase, RluA family | low | > 73 |
| Serratia liquefaciens MT49 | 0.60 | IAI46_10545 | | aldehyde dehydrogenase PuuC | 0.56 | IAI46_03985 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 86 |
| Escherichia coli ECRC62 | 0.58 | BNILDI_18265 | puuC | aldehyde dehydrogenase PuuC | 0.55 | BNILDI_11730 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Escherichia coli ECOR27 | 0.58 | NOLOHH_20115 | puuC | aldehyde dehydrogenase PuuC | 0.55 | NOLOHH_12925 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Escherichia coli BW25113 | 0.58 | b1300 | puuC | gamma-Glu-gamma-aminobutyraldehyde dehydrogenase, NAD(P)H-dependent (NCBI) | 0.55 | b2594 | rluD | 23S rRNA pseudouridine synthase (NCBI) | — | — |
| Escherichia coli ECOR38 | 0.58 | HEPCGN_25770 | puuC | aldehyde dehydrogenase PuuC | 0.55 | HEPCGN_20375 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 87 |
| Escherichia coli BL21 | 0.58 | ECD_01277 | | gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; succinate semialdehyde dehydrogenase | 0.55 | ECD_02484 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | low | > 61 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.58 | OHPLBJKB_02382 | | NADP/NAD-dependent aldehyde dehydrogenase PuuC | 0.55 | OHPLBJKB_01112 | | Ribosomal large subunit pseudouridine synthase D | low | > 73 |
| Klebsiella michiganensis M5al | 0.58 | BWI76_RS10695 | | aldehyde dehydrogenase PuuC | 0.53 | BWI76_RS21450 | | 23S rRNA pseudouridine(1911/1915/1917) synthase | low | > 92 |
| Escherichia coli ECRC100 | 0.58 | OKFHMN_02430 | puuC | aldehyde dehydrogenase PuuC | 0.55 | OKFHMN_21250 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 80 |
| Escherichia coli ECRC101 | 0.58 | MCAODC_15840 | puuC | aldehyde dehydrogenase PuuC | 0.55 | MCAODC_11780 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 87 |
| Escherichia coli ECRC102 | 0.58 | NIAGMN_26600 | puuC | aldehyde dehydrogenase PuuC | 0.55 | NIAGMN_19020 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli ECRC98 | 0.58 | JDDGAC_04975 | puuC | aldehyde dehydrogenase PuuC | 0.55 | JDDGAC_24915 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 86 |
| Escherichia coli ECRC99 | 0.58 | KEDOAH_26345 | puuC | aldehyde dehydrogenase PuuC | 0.55 | KEDOAH_06970 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Rhodospirillum rubrum S1H | 0.56 | Rru_A0298 | | Aldehyde dehydrogenase (NAD+) (NCBI) | 0.32 | Rru_A1111 | | Pseudouridine synthase, RluD (NCBI) | low | > 58 |
| Enterobacter asburiae PDN3 | 0.55 | EX28DRAFT_1501 | | NAD-dependent aldehyde dehydrogenases | 0.54 | EX28DRAFT_2695 | | pseudouridine synthase, RluA family | low | > 76 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.55 | GFF2030 | | Aldehyde dehydrogenase (EC 1.2.1.3) | 0.34 | GFF4870 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | low | > 90 |
| Caulobacter crescentus NA1000 | 0.54 | CCNA_03243 | | NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase | 0.33 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.54 | CCNA_03243 | | NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase | 0.33 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | low | > 67 |
| Azospirillum sp. SherDot2 | 0.47 | MPMX19_03254 | | NADP/NAD-dependent aldehyde dehydrogenase PuuC | 0.36 | MPMX19_05442 | | Ribosomal large subunit pseudouridine synthase D | low | > 112 |
| Agrobacterium fabrum C58 | 0.47 | Atu3959 | | aldehyde dehydrogenase | 0.33 | Atu2443 | | ribosomal large subunit pseudouridine synthase, RluD subfamily | — | — |
| Castellaniella sp019104865 MT123 | 0.46 | ABCV34_RS06275 | | aldehyde dehydrogenase | 0.35 | ABCV34_RS01885 | | RluA family pseudouridine synthase | low | > 48 |
| Ralstonia solanacearum GMI1000 | 0.46 | RS_RS10585 | | aldehyde dehydrogenase | 0.43 | RS_RS08205 | | RluA family pseudouridine synthase | low | > 80 |
| Phaeobacter inhibens DSM 17395 | 0.45 | PGA1_c32250 | | gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC | 0.34 | PGA1_c09000 | | ribosomal large subunit pseudouridine synthase D | low | > 62 |
| Variovorax sp. OAS795 | 0.40 | ABID97_RS18885 | | aldehyde dehydrogenase family protein | 0.28 | ABID97_RS14190 | | RluA family pseudouridine synthase | low | > 91 |
| Rhodopseudomonas palustris CGA009 | 0.34 | TX73_019470 | | 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase | 0.36 | TX73_001905 | | RluA family pseudouridine synthase | low | > 86 |
| Bosea sp. OAE506 | 0.32 | ABIE41_RS12130 | | aldehyde dehydrogenase family protein | 0.33 | ABIE41_RS05635 | | RluA family pseudouridine synthase | low | > 77 |
Not shown: 5 genomes with orthologs for Psyr_0227 only; 50 genomes with orthologs for Psyr_0726 only