Conservation of cofitness between Pf1N1B4_826 and Pf1N1B4_4042 in Pseudomonas fluorescens FW300-N1B4

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N1B4 1.0 Pf1N1B4_826 tRNA (5-methoxyuridine) 34 synthase 1.0 Pf1N1B4_4042 Isocitrate lyase (EC 4.1.3.1) (from data) 0.33 3
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_4812 tRNA (5-methoxyuridine) 34 synthase 0.99 PfGW456L13_2633 Isocitrate lyase (EC 4.1.3.1) low > 87
Pseudomonas fluorescens FW300-N2E3 0.98 AO353_16015 tRNA (mo5U34)-methyltransferase 0.99 AO353_27735 isocitrate lyase low > 101
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_3158 tRNA (5-methoxyuridine) 34 synthase 0.99 Pf6N2E2_279 Isocitrate lyase (EC 4.1.3.1) low > 103
Pseudomonas simiae WCS417 0.94 PS417_05220 tRNA methyltransferase 0.99 PS417_16570 isocitrate lyase low > 88
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_06450 tRNA (mo5U34)-methyltransferase 0.99 AO356_22080 isocitrate lyase low > 104
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS05290 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.99 PFLU_RS18610 isocitrate lyase low > 109
Pseudomonas fluorescens SBW25 0.93 PFLU_RS05290 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.99 PFLU_RS18610 isocitrate lyase low > 109
Pseudomonas sp. RS175 0.92 PFR28_00318 tRNA U34 carboxymethyltransferase 0.99 PFR28_02625 Isocitrate lyase low > 88
Pseudomonas putida KT2440 0.87 PP_1440 tRNA (mo5U34)-methyltransferase 0.96 PP_4116 isocitrate lyase low > 96
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_3947 Methyltransferase, putative 0.97 Psyr_3196 isocitrate lyase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_3947 Methyltransferase, putative 0.97 Psyr_3196 isocitrate lyase low > 86
Pseudomonas stutzeri RCH2 0.80 Psest_3085 methyltransferase, putative 0.15 Psest_2014 Isocitrate lyase (EC 4.1.3.1) (from data) low > 67
Pseudomonas sp. S08-1 0.76 OH686_05375 tRNA (mo5U34)-methyltransferase 0.14 OH686_00170 Isocitrate lyase low > 80
Klebsiella michiganensis M5al 0.56 BWI76_RS18195 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.71 BWI76_RS01665 Isocitrate lyase (EC 4.1.3.1) (from data) low > 92
Escherichia coli ECRC102 0.56 NIAGMN_01840 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.72 NIAGMN_11015 aceA isocitrate lyase — —
Escherichia coli ECRC98 0.56 JDDGAC_00795 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.72 JDDGAC_16890 aceA isocitrate lyase low > 86
Escherichia coli ECRC100 0.56 OKFHMN_26220 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.72 OKFHMN_13265 aceA isocitrate lyase low > 80
Escherichia coli ECRC62 0.56 BNILDI_15455 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.72 BNILDI_06110 aceA isocitrate lyase low > 75
Escherichia coli ECRC101 0.56 MCAODC_19185 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.72 MCAODC_03765 aceA isocitrate lyase low > 87
Escherichia coli ECRC99 0.56 KEDOAH_01885 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.72 KEDOAH_14895 aceA isocitrate lyase — —
Enterobacter sp. TBS_079 0.55 MPMX20_02776 tRNA U34 carboxymethyltransferase 0.72 MPMX20_00232 Isocitrate lyase low > 85
Escherichia coli BL21 0.55 ECD_01842 tRNA (cmo5U34)-carboxymethyltransferase, carboxy-SAM-dependent 0.72 ECD_03887 isocitrate lyase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_01857 tRNA U34 carboxymethyltransferase 0.72 OHPLBJKB_04035 Isocitrate lyase low > 73
Escherichia coli ECOR38 0.55 HEPCGN_04630 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.72 HEPCGN_11905 aceA isocitrate lyase low > 87
Escherichia coli ECOR27 0.55 NOLOHH_16665 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.72 NOLOHH_05410 aceA isocitrate lyase low > 75
Enterobacter asburiae PDN3 0.55 EX28DRAFT_0686 tRNA (mo5U34)-methyltransferase 0.72 EX28DRAFT_4329 isocitrate lyase low > 76
Escherichia coli Nissle 1917 0.55 ECOLIN_RS10700 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.72 ECOLIN_RS26870 isocitrate lyase — —
Escherichia fergusonii Becca 0.55 EFB2_02071 tRNA U34 carboxymethyltransferase 0.72 EFB2_04595 Isocitrate lyase low > 86
Escherichia coli BW25113 0.55 b1871 yecP predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) 0.72 b4015 aceA isocitrate lyase (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF1652 tRNA (5-methoxyuridine) 34 synthase 0.72 GFF1352 Isocitrate lyase (EC 4.1.3.1) low > 78
Dickeya dadantii 3937 0.55 DDA3937_RS10035 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.71 DDA3937_RS19055 isocitrate lyase low > 74
Pantoea sp. MT58 0.55 IAI47_08405 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.68 IAI47_18005 isocitrate lyase low > 76
Dickeya dianthicola 67-19 0.55 HGI48_RS10065 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.71 HGI48_RS19145 isocitrate lyase low > 71
Dickeya dianthicola ME23 0.54 DZA65_RS10475 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.72 DZA65_RS20265 isocitrate lyase low > 75
Shewanella oneidensis MR-1 0.54 SO2436 methyltransferase, putative (NCBI ptt file) 0.77 SO1484 aceA Isocitrate lyase (EC 4.1.3.1) (from data) low > 76
Marinobacter adhaerens HP15 0.53 HP15_2493 methyltransferase 0.14 HP15_3234 isocitrate lyase low > 73
Shewanella sp. ANA-3 0.53 Shewana3_1950 putative methyltransferase (RefSeq) 0.78 Shewana3_2942 isocitrate lyase (RefSeq) low > 73
Serratia liquefaciens MT49 0.53 IAI46_14675 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.72 IAI46_23190 isocitrate lyase low > 86
Rahnella sp. WP5 0.53 EX31_RS17290 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.72 EX31_RS11745 isocitrate lyase low > 89
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_05895 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.78 CSW01_03830 isocitrate lyase low > 62
Shewanella amazonensis SB2B 0.52 Sama_1846 methyltransferase, putative (RefSeq) 0.78 Sama_2380 Isocitrate lyase (EC 4.1.3.1) (from data) low > 62
Shewanella loihica PV-4 0.52 Shew_2082 putative methyltransferase (RefSeq) 0.78 Shew_1276 Isocitrate lyase (EC 4.1.3.1) (from data) low > 60
Pectobacterium carotovorum WPP14 0.52 HER17_RS11890 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.71 HER17_RS02295 isocitrate lyase low > 75

Not shown: 3 genomes with orthologs for Pf1N1B4_826 only; 35 genomes with orthologs for Pf1N1B4_4042 only