Conservation of cofitness between Pf1N1B4_1186 and Pf1N1B4_1188 in Pseudomonas fluorescens FW300-N1B4

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N1B4 1.0 Pf1N1B4_1186 L-lactate permease 1.0 Pf1N1B4_1188 Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF 0.83 1
Pseudomonas sp. RS175 0.94 PFR28_00063 Glycolate permease GlcA 0.95 PFR28_00061 Lactate utilization protein B 0.94 1
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_07550 L-lactate and D-lactate permease (lctP family) (from data) 0.93 AO356_07560 (Fe-S)-binding protein 0.95 1
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_5114 L-lactate permease 0.97 PfGW456L13_5116 Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF 0.98 1
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_05700 L-lactate permease 0.98 AO353_05710 (Fe-S)-binding protein 0.92 2
Escherichia coli BW25113 0.75 b2975 yghK glycolate transporter (NCBI) 0.35 b0307 ykgF predicted amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain (NCBI) low > 76
Escherichia coli Nissle 1917 0.75 ECOLIN_RS17115 glycolate permease GlcA 0.35 ECOLIN_RS02005 LutB/LldF family L-lactate oxidation iron-sulfur protein low > 55
Escherichia coli BL21 0.75 ECD_02843 glycolate transporter 0.35 ECD_00263 ferridoxin-like LutB family protein; putative electron transport chain YkgEFG component low > 61
Escherichia coli ECRC62 0.75 BNILDI_00565 glcA glycolate permease GlcA 0.35 BNILDI_00040 ykgF LutB/LldF family L-lactate oxidation iron-sulfur protein low > 75
Escherichia fergusonii Becca 0.75 EFB2_00840 Glycolate permease GlcA 0.35 EFB2_03733 Lactate utilization protein B low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_00732 Glycolate permease GlcA 0.35 OHPLBJKB_03375 Lactate utilization protein B low > 73
Escherichia coli ECOR38 0.75 HEPCGN_18025 glcA glycolate permease GlcA 0.35 HEPCGN_10710 LutB/LldF family L-lactate oxidation iron-sulfur protein low > 87
Escherichia coli ECOR27 0.75 NOLOHH_10950 glcA glycolate permease GlcA 0.35 NOLOHH_01915 ykgF LutB/LldF family L-lactate oxidation iron-sulfur protein low > 75
Azospirillum brasilense Sp245 0.69 AZOBR_RS25125 L-lactate permease 0.55 AZOBR_RS25110 (Fe-S)-binding protein low > 97
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS21280 L-lactate permease 0.60 RR42_RS21285 L-lactate dehydrogenase, LutB subunit (from data) 0.86 2
Paraburkholderia sabiae LMG 24235 0.68 QEN71_RS10155 lactate permease LctP family transporter 0.60 QEN71_RS10150 LutB/LldF family L-lactate oxidation iron-sulfur protein low > 153
Shewanella oneidensis MR-1 0.68 SO0827 lldP propionate/L-lactate/D-lactate transporter (from data) 0.27 SO1519 iron-sulfur cluster-binding protein (NCBI ptt file) low > 76
Escherichia coli ECRC98 0.63 JDDGAC_19405 lldP L-lactate permease 0.35 JDDGAC_12750 ykgF LutB/LldF family L-lactate oxidation iron-sulfur protein low > 86
Escherichia coli ECRC99 0.63 KEDOAH_12370 lldP L-lactate permease 0.35 KEDOAH_18865 ykgF LutB/LldF family L-lactate oxidation iron-sulfur protein — —
Escherichia coli ECRC101 0.63 MCAODC_06290 lldP L-lactate permease 0.35 MCAODC_28325 ykgF LutB/LldF family L-lactate oxidation iron-sulfur protein low > 87
Escherichia coli ECRC102 0.63 NIAGMN_13540 lldP L-lactate permease 0.35 NIAGMN_07165 ykgF LutB/LldF family L-lactate oxidation iron-sulfur protein — —
Escherichia coli ECRC100 0.63 OKFHMN_15780 lldP L-lactate permease 0.35 OKFHMN_09100 ykgF LutB/LldF family L-lactate oxidation iron-sulfur protein low > 80
Rhodospirillum rubrum S1H 0.62 Rru_A1409 L-lactate permease (NCBI) 0.51 Rru_A1412 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) low > 58
Magnetospirillum magneticum AMB-1 0.61 AMB_RS20875 L-lactate permease 0.53 AMB_RS20890 iron-sulfur cluster-binding protein low > 64
Desulfovibrio vulgaris Miyazaki F 0.48 DvMF_2129 L-lactate transport (RefSeq) 0.54 DvMF_0396 iron-sulfur cluster binding protein (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.47 DVU3284 b2975 L-lactate permease (TIGR) 0.55 DVU1782 iron-sulfur cluster-binding protein (TIGR) low > 55
Paraburkholderia graminis OAS925 0.31 ABIE53_002860 lactate permease 0.37 ABIE53_002786 L-lactate dehydrogenase complex protein LldF low > 113
Paraburkholderia bryophila 376MFSha3.1 0.30 H281DRAFT_00392 lactate permease 0.37 H281DRAFT_00473 iron-sulfur cluster-binding protein low > 103
Burkholderia phytofirmans PsJN 0.29 BPHYT_RS13235 lactate permease 0.37 BPHYT_RS12805 hypothetical protein low > 109
Dickeya dianthicola ME23 0.23 DZA65_RS12780 L-lactate permease 0.34 DZA65_RS12790 iron-sulfur cluster-binding protein low > 75
Dickeya dianthicola 67-19 0.23 HGI48_RS12340 L-lactate permease 0.34 HGI48_RS12350 iron-sulfur cluster-binding protein low > 71
Dickeya dadantii 3937 0.23 DDA3937_RS12250 L-lactate permease 0.34 DDA3937_RS12260 iron-sulfur cluster-binding protein low > 74
Bacteroides thetaiotaomicron VPI-5482 0.21 BT1453 L-lactate permease (NCBI ptt file) 0.28 BT4456 putative electron transport protein (NCBI ptt file) 0.19 37
Phocaeicola vulgatus CL09T03C04 0.21 HMPREF1058_RS17640 L-lactate permease 0.29 HMPREF1058_RS18105 lactate utilization protein low > 67
Bacteroides ovatus ATCC 8483 0.21 BACOVA_04138 transporter, lactate permease (LctP) family 0.27 BACOVA_05263 putative iron-sulfur cluster-binding protein low > 94
Pseudomonas stutzeri RCH2 0.15 Psest_0955 D,L-lactate:H+ symporter (from data) 0.86 Psest_0953 iron-sulfur cluster-binding protein 0.82 2
Shewanella loihica PV-4 0.14 Shew_3135 L-lactate permease (RefSeq) 0.29 Shew_3005 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) 0.65 3
Shewanella sp. ANA-3 0.14 Shewana3_2904 propionate/L-lactate/D-lactate transporter (from data) 0.27 Shewana3_2907 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) 0.51 30
Phocaeicola dorei CL03T12C01 0.10 ABI39_RS13830 L-lactate permease 0.29 ABI39_RS14430 lactate utilization protein low > 72

Not shown: 17 genomes with orthologs for Pf1N1B4_1186 only; 12 genomes with orthologs for Pf1N1B4_1188 only