Conservation of cofitness between PP_0366 and PP_5348 in Pseudomonas putida KT2440

27 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0366 dethiobiotin synthetase 1.0 PP_5348 Transcriptional regulator, LysR family 0.58 6
Pseudomonas fluorescens GW456-L13 0.79 PfGW456L13_1151 Dethiobiotin synthetase (EC 6.3.3.3) 0.84 PfGW456L13_727 LysR family transcriptional regulator PA5437 0.64 66
Pseudomonas fluorescens FW300-N1B4 0.78 Pf1N1B4_2491 Dethiobiotin synthetase (EC 6.3.3.3) 0.85 Pf1N1B4_2009 LysR family transcriptional regulator PA5437 0.46 57
Pseudomonas fluorescens FW300-N2C3 0.77 AO356_14155 dethiobiotin synthetase 0.85 AO356_12015 LysR family transcriptional regulator 0.49 10
Pseudomonas fluorescens SBW25 0.77 PFLU_RS27630 dethiobiotin synthase 0.84 PFLU_RS29885 LysR family transcriptional regulator low > 109
Pseudomonas fluorescens FW300-N2E2 0.77 Pf6N2E2_4764 Dethiobiotin synthetase (EC 6.3.3.3) 0.83 Pf6N2E2_4277 LysR family transcriptional regulator PA5437 0.52 25
Pseudomonas fluorescens SBW25-INTG 0.77 PFLU_RS27630 dethiobiotin synthase 0.84 PFLU_RS29885 LysR family transcriptional regulator 0.54 6
Pseudomonas sp. RS175 0.77 PFR28_04099 ATP-dependent dethiobiotin synthetase BioD 1 0.86 PFR28_04519 HTH-type transcriptional activator CmpR — —
Pseudomonas fluorescens FW300-N2E3 0.77 AO353_07505 dethiobiotin synthetase 0.87 AO353_10035 LysR family transcriptional regulator 0.71 8
Pseudomonas simiae WCS417 0.76 PS417_25985 dethiobiotin synthetase 0.84 PS417_28220 LysR family transcriptional regulator 0.22 43
Pseudomonas sp. S08-1 0.72 OH686_10335 dethiobiotin synthase 0.71 OH686_13195 Transcriptional regulator, LysR family low > 80
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_4683 dethiobiotin synthase 0.80 Psyr_5062 transcriptional regulator, LysR family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_4683 dethiobiotin synthase 0.80 Psyr_5062 transcriptional regulator, LysR family low > 86
Pseudomonas stutzeri RCH2 0.62 Psest_0415 dethiobiotin synthase 0.74 Psest_4086 Transcriptional regulator 0.65 6
Shewanella loihica PV-4 0.53 Shew_1722 dethiobiotin synthase (RefSeq) 0.33 Shew_1245 LysR family transcriptional regulator (RefSeq) — —
Shewanella sp. ANA-3 0.51 Shewana3_2516 bioD dithiobiotin synthetase (RefSeq) 0.22 Shewana3_0835 LysR family transcriptional regulator (RefSeq) — —
Shewanella oneidensis MR-1 0.51 SO2737 bioD dethiobiotin synthase (NCBI ptt file) 0.23 SO3757 rbcR rubisco operon transcriptional regulator (NCBI ptt file) — —
Dechlorosoma suillum PS 0.43 Dsui_2884 dethiobiotin synthase 0.30 Dsui_2869 transcriptional regulator low > 51
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF3994 Dethiobiotin synthetase (EC 6.3.3.3) 0.32 GFF2192 Cys regulon transcriptional activator CysB — —
Shewanella amazonensis SB2B 0.42 Sama_1441 bioD dithiobiotin synthetase (RefSeq) 0.24 Sama_0693 RuBisCo operon transcriptional regulator (RefSeq) — —
Variovorax sp. OAS795 0.37 ABID97_RS16255 dethiobiotin synthase 0.31 ABID97_RS24450 LysR family transcriptional regulator — —
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS02155 dithiobiotin synthetase 0.34 BPHYT_RS29890 LysR family transcriptional regulator low > 109
Acidovorax sp. GW101-3H11 0.35 Ac3H11_3829 Dethiobiotin synthetase (EC 6.3.3.3) 0.31 Ac3H11_3174 RuBisCO operon transcriptional regulator low > 79
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_02096 dethiobiotin synthetase 0.35 H281DRAFT_03013 transcriptional regulator, LysR family low > 103
Paraburkholderia graminis OAS925 0.34 ABIE53_000578 dethiobiotin synthetase 0.34 ABIE53_005077 DNA-binding transcriptional LysR family regulator low > 113
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS01090 dethiobiotin synthase 0.33 QEN71_RS20425 LysR family transcriptional regulator — —
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS00935 dethiobiotin synthetase 0.33 RR42_RS31340 transcriptional regulator — —
Synechococcus elongatus PCC 7942 0.15 Synpcc7942_0030 bioD dethiobiotin synthase 0.38 Synpcc7942_1310 cmpR ndhF3 operon transcriptional regulator — —

Not shown: 55 genomes with orthologs for PP_0366 only; 4 genomes with orthologs for PP_5348 only