Conservation of cofitness between PP_5338 and PP_5309 in Pseudomonas putida KT2440

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5338 aspartate ammonia-lyase 1.0 PP_5309 oxidative and nitrosative stress transcriptional dual regulator 0.44 2
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_4085 Aspartate ammonia-lyase (EC 4.3.1.1) 0.93 Pf6N2E2_4353 Hydrogen peroxide-inducible genes activator — —
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_11090 aspartate ammonia-lyase 0.90 AO356_12385 LysR family transcriptional regulator low > 104
Pseudomonas sp. RS175 0.93 PFR28_04498 Aspartate ammonia-lyase 0.90 PFR28_04434 Hydrogen peroxide-inducible genes activator low > 88
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_2025 Aspartate ammonia-lyase (EC 4.3.1.1) 0.89 Pf1N1B4_2106 Hydrogen peroxide-inducible genes activator — —
Pseudomonas simiae WCS417 0.93 PS417_28130 aspartate ammonia-lyase 0.89 PS417_27865 LysR family transcriptional regulator — —
Pseudomonas fluorescens SBW25 0.93 PFLU_RS29815 aspartate ammonia-lyase 0.88 PFLU_RS29545 hydrogen peroxide-inducible genes activator low > 109
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS29815 aspartate ammonia-lyase 0.88 PFLU_RS29545 hydrogen peroxide-inducible genes activator low > 109
Pseudomonas fluorescens FW300-N2E3 0.93 AO353_09950 aspartate ammonia-lyase 0.88 AO353_09315 LysR family transcriptional regulator 0.22 55
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_742 Aspartate ammonia-lyase (EC 4.3.1.1) 0.88 PfGW456L13_773 Hydrogen peroxide-inducible genes activator low > 87
Pseudomonas syringae pv. syringae B728a 0.92 Psyr_5051 Aspartate ammonia-lyase 0.92 Psyr_0202 transcriptional regulator, LysR family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.92 Psyr_5051 Aspartate ammonia-lyase 0.92 Psyr_0202 transcriptional regulator, LysR family low > 86
Pseudomonas sp. S08-1 0.88 OH686_13315 Aspartate ammonia-lyase 0.85 OH686_13510 Hydrogen peroxide-inducible genes activator — —
Pseudomonas stutzeri RCH2 0.84 Psest_4074 Aspartate ammonia-lyase 0.87 Psest_4191 Transcriptional regulator — —
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS26135 aspartate ammonia-lyase 0.48 RR42_RS17385 LysR family transcriptional regulator low > 128
Pontibacter actiniarum KMM 6156, DSM 19842 0.59 CA264_18450 aspartate ammonia-lyase 0.30 CA264_13765 DNA-binding transcriptional regulator OxyR low > 74
Shewanella amazonensis SB2B 0.58 Sama_0789 aspartate ammonia-lyase (RefSeq) 0.23 Sama_0860 LysR family transcriptional regulator (RefSeq) low > 62
Azospirillum sp. SherDot2 0.57 MPMX19_03594 Aspartate ammonia-lyase 0.37 MPMX19_04930 Hydrogen peroxide-inducible genes activator low > 112
Dechlorosoma suillum PS 0.56 Dsui_3481 aspartate ammonia-lyase 0.55 Dsui_0823 transcriptional regulator low > 51
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS33820 aspartate ammonia-lyase 0.51 QEN71_RS26625 LysR substrate-binding domain-containing protein low > 153
Phocaeicola dorei CL03T12C01 0.55 ABI39_RS20055 aspartate ammonia-lyase 0.27 ABI39_RS06075 hydrogen peroxide-inducible genes activator low > 72
Bacteroides ovatus ATCC 8483 0.54 BACOVA_01069 aspartate ammonia-lyase 0.28 BACOVA_05567 LysR substrate binding domain protein low > 94
Bacteroides thetaiotaomicron VPI-5482 0.54 BT2755 aspartate ammonia-lyase (NCBI ptt file) 0.28 BT4716 redox-sensitive transcriptional activator (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.54 HMPREF1181_RS11250 aspartate ammonia-lyase 0.27 HMPREF1181_RS02160 hydrogen peroxide-inducible genes activator low > 56
Agrobacterium fabrum C58 0.53 Atu3793 aspartate ammonia-lyase 0.29 Atu4641 LysR family transcriptional regulator low > 89
Rahnella sp. WP5 0.53 EX31_RS08965 aspartate ammonia-lyase 0.35 EX31_RS14170 DNA-binding transcriptional regulator OxyR low > 89
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_13620 aspartate ammonia-lyase 0.32 CSW01_13340 DNA-binding transcriptional regulator OxyR low > 62
Variovorax sp. SCN45 0.52 GFF4594 Aspartate ammonia-lyase (EC 4.3.1.1) 0.47 GFF5549 Hydrogen peroxide-inducible genes activator => OxyR low > 127
Escherichia coli ECOR38 0.52 HEPCGN_10655 aspA aspartate ammonia-lyase 0.36 HEPCGN_12210 oxyR DNA-binding transcriptional regulator OxyR low > 85
Escherichia coli ECRC98 0.52 JDDGAC_16065 aspA aspartate ammonia-lyase 0.36 JDDGAC_17190 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli BW25113 0.52 b4139 aspA aspartate ammonia-lyase (aspartase) (VIMSS) 0.36 b3961 oxyR DNA-binding transcriptional dual regulator (NCBI) 0.28 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_03904 Aspartate ammonia-lyase 0.36 OHPLBJKB_04089 Hydrogen peroxide-inducible genes activator low > 73
Escherichia coli ECRC101 0.52 OKFHMN_12430 aspA aspartate ammonia-lyase 0.36 OKFHMN_13565 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECOR27 0.52 NOLOHH_04695 aspA aspartate ammonia-lyase 0.36 NOLOHH_05700 oxyR DNA-binding transcriptional regulator OxyR low > 57
Escherichia coli Nissle 1917 0.52 ECOLIN_RS24045 aspartate ammonia-lyase 0.36 ECOLIN_RS22870 DNA-binding transcriptional regulator OxyR low > 52
Escherichia coli ECRC101 0.52 MCAODC_02940 aspA aspartate ammonia-lyase 0.36 MCAODC_04065 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli BL21 0.52 ECD_04009 aspartate ammonia-lyase 0.36 ECD_03846 oxidative and nitrosative stress transcriptional regulator low > 60
Escherichia coli ECRC62 0.52 BNILDI_06795 aspA aspartate ammonia-lyase 0.36 BNILDI_05825 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia fergusonii Becca 0.52 EFB2_04396 Aspartate ammonia-lyase 0.36 EFB2_04651 Hydrogen peroxide-inducible genes activator low > 86
Escherichia coli ECRC99 0.52 KEDOAH_15735 aspA aspartate ammonia-lyase 0.36 KEDOAH_14595 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECRC102 0.52 NIAGMN_10275 aspA aspartate ammonia-lyase 0.36 NIAGMN_11315 oxyR DNA-binding transcriptional regulator OxyR — —
Variovorax sp. OAS795 0.52 ABID97_RS05930 aspartate ammonia-lyase 0.46 ABID97_RS01570 LysR substrate-binding domain-containing protein low > 91
Serratia liquefaciens MT49 0.52 IAI46_01480 aspartate ammonia-lyase 0.34 IAI46_24475 DNA-binding transcriptional regulator OxyR low > 86
Pectobacterium carotovorum WPP14 0.52 HER17_RS18835 aspartate ammonia-lyase 0.36 HER17_RS00955 DNA-binding transcriptional regulator OxyR low > 75
Enterobacter asburiae PDN3 0.52 EX28DRAFT_3336 aspartate ammonia-lyase 0.36 EX28DRAFT_4424 Transcriptional regulator — —
Klebsiella michiganensis M5al 0.52 BWI76_RS02330 aspartate ammonia-lyase 0.35 BWI76_RS00865 DNA-binding transcriptional regulator OxyR low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF2013 Aspartate ammonia-lyase (EC 4.3.1.1) 0.35 GFF2347 Hydrogen peroxide-inducible genes activator low > 78
Enterobacter sp. TBS_079 0.52 MPMX20_00419 Aspartate ammonia-lyase 0.36 MPMX20_04519 Hydrogen peroxide-inducible genes activator low > 85
Dickeya dianthicola ME23 0.51 DZA65_RS02850 aspartate ammonia-lyase 0.36 DZA65_RS21450 DNA-binding transcriptional regulator OxyR low > 75
Dickeya dianthicola 67-19 0.51 HGI48_RS02695 aspartate ammonia-lyase 0.36 HGI48_RS20405 DNA-binding transcriptional regulator OxyR low > 71
Pantoea sp. MT58 0.51 IAI47_17320 aspartate ammonia-lyase 0.34 IAI47_00930 DNA-binding transcriptional regulator OxyR 0.34 17
Acinetobacter radioresistens SK82 0.51 MPMX26_01469 Aspartate ammonia-lyase 0.27 MPMX26_02334 Hydrogen peroxide-inducible genes activator low > 36
Dickeya dadantii 3937 0.51 DDA3937_RS02720 aspartate ammonia-lyase 0.36 DDA3937_RS00970 DNA-binding transcriptional regulator OxyR low > 74
Castellaniella sp019104865 MT123 0.46 ABCV34_RS07730 aspartate ammonia-lyase 0.52 ABCV34_RS03575 LysR substrate-binding domain-containing protein low > 48

Not shown: 4 genomes with orthologs for PP_5338 only; 41 genomes with orthologs for PP_5309 only