Conservation of cofitness between PP_5127 and PP_4964 in Pseudomonas putida KT2440

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5127 ribosomal RNA large subunit methyltransferase I 1.0 PP_4964 D-erythrose 4-phosphate dehydrogenase 0.18 7
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_13260 SAM-dependent methyltransferase 0.89 AO356_13685 glyceraldehyde-3-phosphate dehydrogenase low > 104
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_4566 LSU m5C1962 methyltransferase RlmI 0.89 Pf6N2E2_4656 D-erythrose-4-phosphate dehydrogenase — —
Pseudomonas sp. RS175 0.92 PFR28_04274 Ribosomal RNA large subunit methyltransferase I 0.89 PFR28_04187 D-erythrose-4-phosphate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_08330 SAM-dependent methyltransferase 0.89 AO353_07950 glyceraldehyde-3-phosphate dehydrogenase — —
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_2307 LSU m5C1962 methyltransferase RlmI 0.89 Pf1N1B4_2398 D-erythrose-4-phosphate dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_977 LSU m5C1962 methyltransferase RlmI 0.88 PfGW456L13_1065 D-erythrose-4-phosphate dehydrogenase — —
Pseudomonas simiae WCS417 0.92 PS417_26880 SAM-dependent methyltransferase 0.88 PS417_26435 glyceraldehyde-3-phosphate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a 0.92 Psyr_4764 SAM-dependent methyltransferase 0.85 Psyr_4791 D-erythrose-4-phosphate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.92 Psyr_4764 SAM-dependent methyltransferase 0.85 Psyr_4791 D-erythrose-4-phosphate dehydrogenase low > 86
Pseudomonas fluorescens SBW25-INTG 0.92 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase 0.90 PFLU_RS28090 erythrose-4-phosphate dehydrogenase — —
Pseudomonas fluorescens SBW25 0.92 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase 0.90 PFLU_RS28090 erythrose-4-phosphate dehydrogenase — —
Pseudomonas stutzeri RCH2 0.89 Psest_0236 Predicted SAM-dependent methyltransferases 0.83 Psest_0329 erythrose-4-phosphate dehydrogenase — —
Pseudomonas sp. S08-1 0.88 OH686_14110 23S rRNA (cytosine(1962)-C(5))-methyltransferase 0.87 OH686_10765 erythrose-4-phosphate dehydrogenase — —
Marinobacter adhaerens HP15 0.55 HP15_460 SAM-dependent methyltransferase 0.56 HP15_2912 glyceraldehyde 3-phosphate dehydrogenase, type I — —
Vibrio cholerae E7946 ATCC 55056 0.29 CSW01_06820 ribosomal RNA large subunit methyltransferase I 0.48 CSW01_02530 D-erythrose-4-phosphate dehydrogenase low > 62
Shewanella sp. ANA-3 0.27 Shewana3_0977 SAM-dependent methyltransferase (RefSeq) 0.49 Shewana3_3352 erythrose 4-phosphate dehydrogenase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.27 Sama_2965 putative SAM-dependent methyltransferase (RefSeq) 0.50 Sama_2758 erythrose 4-phosphate dehydrogenase (RefSeq) low > 62
Klebsiella michiganensis M5al 0.27 BWI76_RS10045 23S rRNA (cytosine(1962)-C(5))-methyltransferase 0.49 BWI76_RS23985 erythrose-4-phosphate dehydrogenase low > 92
Shewanella oneidensis MR-1 0.27 SO1149 hypothetical SAM-dependent methyltransferase (NCBI ptt file) 0.48 SO0931 epd D-erythrose-4-phosphate dehydrogenase (NCBI ptt file) low > 76
Enterobacter asburiae PDN3 0.27 EX28DRAFT_1976 Predicted SAM-dependent methyltransferases 0.50 EX28DRAFT_2973 erythrose-4-phosphate dehydrogenase low > 76
Escherichia coli ECOR38 0.27 HEPCGN_23335 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.51 HEPCGN_18695 epd erythrose-4-phosphate dehydrogenase low > 85
Escherichia coli ECRC101 0.27 OKFHMN_05185 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.51 OKFHMN_19385 epd erythrose-4-phosphate dehydrogenase — —
Escherichia coli ECRC99 0.27 KEDOAH_22550 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.51 KEDOAH_08755 epd erythrose-4-phosphate dehydrogenase — —
Escherichia coli Nissle 1917 0.27 ECOLIN_RS05085 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.51 ECOLIN_RS16265 erythrose-4-phosphate dehydrogenase — —
Escherichia coli BL21 0.27 ECD_00971 23S rRNA m(5)C1962 methyltransferase, SAM-dependent 0.51 ECD_02758 D-erythrose 4-phosphate dehydrogenase low > 60
Enterobacter sp. TBS_079 0.27 MPMX20_01617 Ribosomal RNA large subunit methyltransferase I 0.51 MPMX20_03779 D-erythrose-4-phosphate dehydrogenase low > 85
Escherichia coli ECRC98 0.27 JDDGAC_08795 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.51 JDDGAC_23015 epd erythrose-4-phosphate dehydrogenase — —
Escherichia coli ECRC102 0.27 NIAGMN_02905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.51 NIAGMN_17150 epd erythrose-4-phosphate dehydrogenase — —
Escherichia coli ECRC101 0.27 MCAODC_24575 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.51 MCAODC_09905 epd erythrose-4-phosphate dehydrogenase — —
Escherichia coli ECOR27 0.27 NOLOHH_21740 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.51 NOLOHH_11295 epd erythrose-4-phosphate dehydrogenase — —
Escherichia coli BW25113 0.27 b0967 yccW predicted methyltransferase (RefSeq) 0.51 b2927 epd D-erythrose 4-phosphate dehydrogenase (NCBI) low > 76
Escherichia fergusonii Becca 0.27 EFB2_03104 Ribosomal RNA large subunit methyltransferase I 0.50 EFB2_00979 D-erythrose-4-phosphate dehydrogenase low > 86
Escherichia coli ECRC62 0.27 BNILDI_19905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.51 BNILDI_09835 epd erythrose-4-phosphate dehydrogenase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_02699 Ribosomal RNA large subunit methyltransferase I 0.51 OHPLBJKB_00789 D-erythrose-4-phosphate dehydrogenase low > 73
Erwinia tracheiphila SCR3 0.26 LU632_RS10090 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.49 LU632_RS05535 epd erythrose-4-phosphate dehydrogenase low > 74
Serratia liquefaciens MT49 0.26 IAI46_08925 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.50 IAI46_21015 erythrose-4-phosphate dehydrogenase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.26 GFF3258 LSU m5C1962 methyltransferase RlmI 0.50 GFF3022 D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72) low > 78
Rahnella sp. WP5 0.26 EX31_RS17990 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.51 EX31_RS21405 erythrose-4-phosphate dehydrogenase low > 89
Pantoea sp. MT58 0.26 IAI47_12595 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.51 IAI47_03685 erythrose-4-phosphate dehydrogenase low > 76
Alteromonas macleodii MIT1002 0.25 MIT1002_01688 Ribosomal RNA large subunit methyltransferase I 0.49 MIT1002_00862 D-erythrose-4-phosphate dehydrogenase — —
Dechlorosoma suillum PS 0.25 Dsui_0653 putative SAM-dependent methyltransferase 0.59 Dsui_1558 glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase — —

Not shown: 40 genomes with orthologs for PP_5127 only; 7 genomes with orthologs for PP_4964 only