Conservation of cofitness between PP_5338 and PP_4880 in Pseudomonas putida KT2440

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5338 aspartate ammonia-lyase 1.0 PP_4880 exoribonuclease R 0.33 17
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_4085 Aspartate ammonia-lyase (EC 4.3.1.1) 0.82 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R — —
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_11090 aspartate ammonia-lyase 0.82 AO356_08610 exoribonuclease R low > 104
Pseudomonas sp. RS175 0.93 PFR28_04498 Aspartate ammonia-lyase 0.83 PFR28_05130 Ribonuclease R low > 88
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_2025 Aspartate ammonia-lyase (EC 4.3.1.1) 0.82 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R — —
Pseudomonas simiae WCS417 0.93 PS417_28130 aspartate ammonia-lyase 0.81 PS417_02555 exoribonuclease R — —
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS29815 aspartate ammonia-lyase 0.81 PFLU_RS02625 ribonuclease R low > 109
Pseudomonas fluorescens FW300-N2E3 0.93 AO353_09950 aspartate ammonia-lyase 0.83 AO353_13200 exoribonuclease R low > 101
Pseudomonas fluorescens SBW25 0.93 PFLU_RS29815 aspartate ammonia-lyase 0.81 PFLU_RS02625 ribonuclease R low > 109
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_742 Aspartate ammonia-lyase (EC 4.3.1.1) 0.83 PfGW456L13_144 3'-to-5' exoribonuclease RNase R low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.92 Psyr_5051 Aspartate ammonia-lyase 0.81 Psyr_0579 RNAse R low > 86
Pseudomonas syringae pv. syringae B728a 0.92 Psyr_5051 Aspartate ammonia-lyase 0.81 Psyr_0579 RNAse R low > 86
Pseudomonas sp. S08-1 0.88 OH686_13315 Aspartate ammonia-lyase 0.78 OH686_15910 ribonuclease R — —
Pseudomonas stutzeri RCH2 0.84 Psest_4074 Aspartate ammonia-lyase 0.75 Psest_0691 ribonuclease R — —
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS26135 aspartate ammonia-lyase 0.43 RR42_RS13065 ribonuclease R low > 128
Pontibacter actiniarum KMM 6156, DSM 19842 0.59 CA264_18450 aspartate ammonia-lyase 0.21 CA264_17355 ribonuclease R low > 74
Shewanella amazonensis SB2B 0.58 Sama_0789 aspartate ammonia-lyase (RefSeq) 0.43 Sama_3067 exoribonuclease II (RefSeq) low > 62
Azospirillum sp. SherDot2 0.57 MPMX19_03594 Aspartate ammonia-lyase 0.22 MPMX19_01812 Ribonuclease R low > 112
Dechlorosoma suillum PS 0.56 Dsui_3481 aspartate ammonia-lyase 0.44 Dsui_3128 ribonuclease R low > 51
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS33820 aspartate ammonia-lyase 0.41 QEN71_RS22925 ribonuclease R low > 153
Desulfovibrio vulgaris Hildenborough JW710 0.54 DVU1871 aspA aspartate ammonia-lyase (TIGR) 0.23 DVU2467 rnr ribonuclease R (TIGR) low > 55
Agrobacterium fabrum C58 0.53 Atu3793 aspartate ammonia-lyase 0.23 Atu1303 exoribonuclease low > 89
Rahnella sp. WP5 0.53 EX31_RS08965 aspartate ammonia-lyase 0.46 EX31_RS08785 ribonuclease R low > 89
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_13620 aspartate ammonia-lyase 0.45 CSW01_13155 ribonuclease R low > 62
Variovorax sp. SCN45 0.52 GFF4594 Aspartate ammonia-lyase (EC 4.3.1.1) 0.37 GFF399 3'-to-5' exoribonuclease RNase R low > 127
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_03904 Aspartate ammonia-lyase 0.45 OHPLBJKB_03863 Ribonuclease R low > 73
Escherichia coli ECOR38 0.52 HEPCGN_10655 aspA aspartate ammonia-lyase 0.45 HEPCGN_10450 rnr ribonuclease R low > 85
Escherichia coli ECRC101 0.52 OKFHMN_12430 aspA aspartate ammonia-lyase 0.45 OKFHMN_12220 rnr ribonuclease R — —
Escherichia coli ECRC98 0.52 JDDGAC_16065 aspA aspartate ammonia-lyase 0.45 JDDGAC_15860 rnr ribonuclease R — —
Escherichia coli ECRC62 0.52 BNILDI_06795 aspA aspartate ammonia-lyase 0.45 BNILDI_07005 rnr ribonuclease R — —
Escherichia coli BW25113 0.52 b4139 aspA aspartate ammonia-lyase (aspartase) (VIMSS) 0.45 b4179 vacB putative enzyme (VIMSS) low > 76
Escherichia coli ECRC99 0.52 KEDOAH_15735 aspA aspartate ammonia-lyase 0.45 KEDOAH_15935 rnr ribonuclease R — —
Escherichia fergusonii Becca 0.52 EFB2_04396 Aspartate ammonia-lyase 0.45 EFB2_04356 Ribonuclease R low > 86
Escherichia coli ECRC101 0.52 MCAODC_02940 aspA aspartate ammonia-lyase 0.45 MCAODC_02735 rnr ribonuclease R — —
Escherichia coli ECOR27 0.52 NOLOHH_04695 aspA aspartate ammonia-lyase 0.45 NOLOHH_04485 rnr ribonuclease R low > 57
Escherichia coli BL21 0.52 ECD_04009 aspartate ammonia-lyase 0.45 ECD_04046 exoribonuclease R, RNase R 0.56 4
Escherichia coli ECRC102 0.52 NIAGMN_10275 aspA aspartate ammonia-lyase 0.45 NIAGMN_10070 rnr ribonuclease R — —
Escherichia coli Nissle 1917 0.52 ECOLIN_RS24045 aspartate ammonia-lyase 0.45 ECOLIN_RS24265 ribonuclease R low > 52
Variovorax sp. OAS795 0.52 ABID97_RS05930 aspartate ammonia-lyase 0.38 ABID97_RS17200 ribonuclease R low > 91
Serratia liquefaciens MT49 0.52 IAI46_01480 aspartate ammonia-lyase 0.45 IAI46_01660 ribonuclease R low > 86
Enterobacter asburiae PDN3 0.52 EX28DRAFT_3336 aspartate ammonia-lyase 0.45 EX28DRAFT_3376 ribonuclease R low > 76
Pectobacterium carotovorum WPP14 0.52 HER17_RS18835 aspartate ammonia-lyase 0.45 HER17_RS03835 ribonuclease R low > 75
Klebsiella michiganensis M5al 0.52 BWI76_RS02330 aspartate ammonia-lyase 0.45 BWI76_RS02575 exoribonuclease R low > 92
Enterobacter sp. TBS_079 0.52 MPMX20_00419 Aspartate ammonia-lyase 0.45 MPMX20_00460 Ribonuclease R low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF2013 Aspartate ammonia-lyase (EC 4.3.1.1) 0.45 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 low > 78
Dickeya dianthicola ME23 0.51 DZA65_RS02850 aspartate ammonia-lyase 0.45 DZA65_RS18405 ribonuclease R low > 75
Dickeya dianthicola 67-19 0.51 HGI48_RS02695 aspartate ammonia-lyase 0.45 HGI48_RS17315 ribonuclease R low > 71
Pantoea sp. MT58 0.51 IAI47_17320 aspartate ammonia-lyase 0.46 IAI47_02625 ribonuclease R 0.28 70
Acinetobacter radioresistens SK82 0.51 MPMX26_01469 Aspartate ammonia-lyase 0.35 MPMX26_02684 Ribonuclease R low > 36
Dickeya dadantii 3937 0.51 DDA3937_RS02720 aspartate ammonia-lyase 0.45 DDA3937_RS17260 ribonuclease R low > 74
Castellaniella sp019104865 MT123 0.46 ABCV34_RS07730 aspartate ammonia-lyase 0.38 ABCV34_RS06625 ribonuclease R low > 48

Not shown: 7 genomes with orthologs for PP_5338 only; 41 genomes with orthologs for PP_4880 only