Conservation of cofitness between PP_3539 and PP_4116 in Pseudomonas putida KT2440

28 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_3539 putative Transcriptional regulator 1.0 PP_4116 isocitrate lyase 0.14 12
Pseudomonas fluorescens GW456-L13 0.86 PfGW456L13_2595 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family 0.97 PfGW456L13_2633 Isocitrate lyase (EC 4.1.3.1) low > 87
Pseudomonas sp. RS175 0.85 PFR28_01263 HTH-type transcriptional regulator CueR 0.96 PFR28_02625 Isocitrate lyase low > 88
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_2188 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family 0.96 Pf6N2E2_279 Isocitrate lyase (EC 4.1.3.1) 0.21 71
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_3991 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family 0.96 Pf1N1B4_4042 Isocitrate lyase (EC 4.1.3.1) (from data) low > 87
Pseudomonas fluorescens FW300-N2C3 0.84 AO356_01565 MerR family transcriptional regulator 0.96 AO356_22080 isocitrate lyase low > 104
Pseudomonas fluorescens FW300-N2E3 0.84 AO353_20370 MerR family transcriptional regulator 0.97 AO353_27735 isocitrate lyase low > 101
Pseudomonas simiae WCS417 0.82 PS417_17000 MerR family transcriptional regulator 0.97 PS417_16570 isocitrate lyase low > 88
Pseudomonas fluorescens SBW25-INTG 0.82 PFLU_RS18950 MerR family DNA-binding transcriptional regulator 0.97 PFLU_RS18610 isocitrate lyase low > 109
Pseudomonas fluorescens SBW25 0.82 PFLU_RS18950 MerR family DNA-binding transcriptional regulator 0.97 PFLU_RS18610 isocitrate lyase low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.77 Psyr_2472 transcriptional regulator, MerR family 0.96 Psyr_3196 isocitrate lyase low > 86
Pseudomonas syringae pv. syringae B728a 0.77 Psyr_2472 transcriptional regulator, MerR family 0.96 Psyr_3196 isocitrate lyase low > 86
Pseudomonas sp. S08-1 0.76 OH686_00860 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family 0.15 OH686_00170 Isocitrate lyase low > 80
Pseudomonas stutzeri RCH2 0.76 Psest_1075 Predicted transcriptional regulators 0.15 Psest_2014 Isocitrate lyase (EC 4.1.3.1) (from data) low > 67
Marinobacter adhaerens HP15 0.57 HP15_1006 transcriptional regulator, MerR family 0.14 HP15_3234 isocitrate lyase low > 73
Shewanella amazonensis SB2B 0.56 Sama_1363 MerR family transcriptional regulator (RefSeq) 0.78 Sama_2380 Isocitrate lyase (EC 4.1.3.1) (from data) 0.59 2
Shewanella oneidensis MR-1 0.56 SO1898 transcriptional regulator, putative (NCBI ptt file) 0.77 SO1484 aceA Isocitrate lyase (EC 4.1.3.1) (from data) low > 76
Shewanella sp. ANA-3 0.56 Shewana3_1673 MerR family transcriptional regulator (RefSeq) 0.77 Shewana3_2942 isocitrate lyase (RefSeq) 0.60 28
Shewanella loihica PV-4 0.54 Shew_2569 MerR family transcriptional regulator (RefSeq) 0.78 Shew_1276 Isocitrate lyase (EC 4.1.3.1) (from data) low > 60
Alteromonas macleodii MIT1002 0.49 MIT1002_01670 Zn(II)-responsive regulator of zntA 0.15 MIT1002_02831 Isocitrate lyase low > 70
Sinorhizobium meliloti 1021 0.42 SMc01260 transcriptional regulator 0.57 SMc00768 isocitrate lyase low > 103
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS00860 MerR family transcriptional regulator 0.69 RR42_RS12200 isocitrate lyase low > 128
Rhizobium sp. OAE497 0.41 ABIE40_RS09800 MerR family DNA-binding transcriptional regulator 0.57 ABIE40_RS03255 isocitrate lyase low > 107
Agrobacterium fabrum C58 0.41 Atu1546 transcriptional regulator, MerR family 0.59 Atu0607 isocitrate lyase low > 89
Acidovorax sp. GW101-3H11 0.40 Ac3H11_2989 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family 0.71 Ac3H11_2831 Isocitrate lyase (EC 4.1.3.1) (from data) low > 79
Azospirillum sp. SherDot2 0.39 MPMX19_01355 hypothetical protein 0.57 MPMX19_05830 Isocitrate lyase low > 112
Azospirillum brasilense Sp245 0.39 AZOBR_RS10195 MerR family transcriptional regulator 0.55 AZOBR_RS02405 isocitrate lyase low > 97
Castellaniella sp019104865 MT123 0.38 ABCV34_RS12375 MerR family DNA-binding transcriptional regulator 0.71 ABCV34_RS06915 isocitrate lyase low > 48
Herbaspirillum seropedicae SmR1 0.38 HSERO_RS23435 MerR family transcriptional regulator 0.71 HSERO_RS10565 isocitrate lyase low > 78

Not shown: 3 genomes with orthologs for PP_3539 only; 51 genomes with orthologs for PP_4116 only