| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_4862 | | 3-hydroxy acid dehydrogenase, NADP-dependent / malonic semialdehyde reductase | 1.0 | PP_3417 | | D-gluconate transporter | 0.22 | 14 |
| Pseudomonas fluorescens FW300-N2E3 | 0.88 | AO353_13380 | | hypothetical protein | 0.75 | AO353_03245 | | permease DsdX | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.87 | Pf1N1B4_1376 | | Oxidoreductase, short chain dehydrogenase/reductase family | 0.74 | Pf1N1B4_556 | | Gluconate permease | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.86 | PfGW456L13_117 | | Oxidoreductase, short chain dehydrogenase/reductase family | 0.74 | PfGW456L13_1927 | | Gluconate permease | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.86 | Pf6N2E2_3575 | | Oxidoreductase, short chain dehydrogenase/reductase family | 0.75 | Pf6N2E2_2863 | | Gluconate permease | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.86 | AO356_08475 | | hypothetical protein | 0.75 | AO356_05055 | | permease DsdX | low | > 104 |
| Pseudomonas sp. RS175 | 0.86 | PFR28_05158 | | Sulfoacetaldehyde reductase | 0.75 | PFR28_00595 | | High-affinity gluconate transporter | low | > 88 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.85 | Psyr_0602 | | Short-chain dehydrogenase/reductase SDR | 0.83 | Psyr_3338 | | gluconate permease GntT | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.85 | Psyr_0602 | | Short-chain dehydrogenase/reductase SDR | 0.83 | Psyr_3338 | | gluconate permease GntT | low | > 86 |
| Pseudomonas simiae WCS417 | 0.80 | PS417_02680 | | hypothetical protein | 0.77 | PS417_21980 | | permease DsdX | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.80 | PFLU_RS02750 | | SDR family oxidoreductase | 0.77 | PFLU_RS23585 | | GntP family permease | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.80 | PFLU_RS02750 | | SDR family oxidoreductase | 0.77 | PFLU_RS23585 | | GntP family permease | low | > 109 |
| Rhodospirillum rubrum S1H | 0.67 | Rru_A2127 | | Serine 3-dehydrogenase (NCBI) | 0.38 | Rru_A3140 | | Gluconate transporter (NCBI) | low | > 58 |
| Klebsiella michiganensis M5al | 0.57 | BWI76_RS07595 | | putative oxidoreductase | 0.43 | BWI76_RS26615 | | gluconate:H+ symporter (from data) | low | > 92 |
| Pectobacterium carotovorum WPP14 | 0.55 | HER17_RS10705 | | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | 0.28 | HER17_RS00545 | | GntP family transporter | low | > 75 |
| Dickeya dadantii 3937 | 0.54 | DDA3937_RS10695 | | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | 0.44 | DDA3937_RS19775 | | gluconate transporter | low | > 74 |
| Dickeya dianthicola ME23 | 0.54 | DZA65_RS11160 | | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | 0.45 | DZA65_RS20960 | | gluconate transporter | low | > 75 |
| Dickeya dianthicola 67-19 | 0.54 | HGI48_RS10690 | | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | 0.45 | HGI48_RS19890 | | gluconate transporter | low | > 71 |
| Rahnella sp. WP5 | 0.53 | EX31_RS07075 | | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | 0.42 | EX31_RS05050 | | gluconate transporter | low | > 89 |
| Serratia liquefaciens MT49 | 0.53 | IAI46_11720 | | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | 0.44 | IAI46_23960 | | gluconate transporter | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.53 | GFF2497 | | 3-hydroxypropionate dehydrogenase (EC 1.1.1.298) | 0.44 | GFF602 | | High-affinity gluconate transporter GntT | low | > 78 |
| Enterobacter asburiae PDN3 | 0.52 | EX28DRAFT_1450 | | Short-chain alcohol dehydrogenase of unknown specificity | 0.45 | EX28DRAFT_4127 | | gluconate transporter | low | > 76 |
| Enterobacter sp. TBS_079 | 0.52 | MPMX20_02099 | | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | 0.46 | MPMX20_04302 | | High-affinity gluconate transporter | low | > 85 |
| Herbaspirillum seropedicae SmR1 | 0.52 | HSERO_RS06135 | | malonic semialdehyde reductase | 0.72 | HSERO_RS05470 | | permease | low | > 78 |
| Escherichia fergusonii Becca | 0.51 | EFB2_02417 | | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | 0.44 | EFB2_00413 | | High-affinity gluconate transporter | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.51 | OHPLBJKB_02173 | | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | 0.44 | OHPLBJKB_00288 | | High-affinity gluconate transporter | low | > 73 |
| Escherichia coli Nissle 1917 | 0.51 | ECOLIN_RS08810 | | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | 0.44 | ECOLIN_RS19505 | | gluconate transporter | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.51 | Ga0059261_2041 | | Short-chain alcohol dehydrogenase of unknown specificity | 0.53 | Ga0059261_1667 | | gluconate permease GntT (TC 2.A.8.1.4) | low | > 68 |
| Escherichia coli BW25113 | 0.51 | b1539 | ydfG | L-allo-threonine dehydrogenase, NAD(P)-binding (NCBI) | 0.44 | b3415 | gntT | gluconate transporter, high-affinity GNT I system (NCBI) | low | > 76 |
| Escherichia coli ECRC99 | 0.51 | KEDOAH_27415 | ydfG | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | 0.44 | KEDOAH_11155 | gntT | gluconate transporter | — | — |
| Escherichia coli ECRC102 | 0.51 | NIAGMN_25160 | ydfG | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | 0.44 | NIAGMN_14755 | gntT | gluconate transporter | — | — |
| Escherichia coli ECRC101 | 0.51 | MCAODC_16910 | ydfG | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | 0.44 | MCAODC_07515 | gntT | gluconate transporter | low | > 87 |
| Escherichia coli BL21 | 0.51 | ECD_01498 | | NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase | 0.44 | ECD_03267 | | gluconate transporter, high-affinity GNT I system | low | > 61 |
| Escherichia coli ECOR27 | 0.51 | NOLOHH_18640 | ydfG | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | 0.44 | NOLOHH_08770 | gntT | gluconate transporter | — | — |
| Escherichia coli ECRC98 | 0.51 | JDDGAC_03525 | ydfG | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | 0.44 | JDDGAC_20615 | gntT | gluconate transporter | low | > 86 |
| Escherichia coli ECOR38 | 0.51 | HEPCGN_26930 | ydfG | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | 0.44 | HEPCGN_15795 | gntT | gluconate transporter | low | > 87 |
| Escherichia coli ECRC62 | 0.51 | BNILDI_17130 | ydfG | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | 0.44 | BNILDI_02745 | gntT | gluconate transporter | low | > 75 |
| Escherichia coli ECRC100 | 0.51 | OKFHMN_01015 | ydfG | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | 0.44 | OKFHMN_16985 | gntT | gluconate transporter | low | > 80 |
| Erwinia tracheiphila SCR3 | 0.50 | LU632_RS11720 | ydfG | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | 0.35 | LU632_RS19170 | gntU | gluconate transporter | low | > 74 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.40 | CA265_RS15110 | | NAD(P)-dependent oxidoreductase | 0.38 | CA265_RS01125 | | gluconate permease | low | > 88 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.39 | Echvi_1820 | | Short-chain alcohol dehydrogenase of unknown specificity | 0.39 | Echvi_2089 | | gluconate transporter | low | > 79 |
| Fusobacterium nucleatum SB010 | 0.36 | HUW76_08120 | | SDR family NAD(P)-dependent oxidoreductase | 0.26 | HUW76_01945 | | GntP family permease | low | > 35 |
| Variovorax sp. SCN45 | 0.29 | GFF4612 | | Short-chain dehydrogenase/reductase SDR | 0.44 | GFF1885 | | Gluconate transporter family protein | low | > 127 |
| Cupriavidus basilensis FW507-4G11 | 0.27 | RR42_RS36075 | | oxidoreductase | 0.56 | RR42_RS28835 | | gluconate:H+ symporter (gntT) (from data) | low | > 128 |
| Acidovorax sp. GW101-3H11 | 0.24 | Ac3H11_2710 | | short-chain dehydrogenase/reductase SDR | 0.28 | Ac3H11_3740 | | Gluconate permease | low | > 79 |
| Alteromonas macleodii MIT1002 | 0.24 | MIT1002_02336 | | putative oxidoreductase | 0.38 | MIT1002_03473 | | 5-keto-D-gluconate transporter | low | > 70 |
| Vibrio cholerae E7946 ATCC 55056 | 0.22 | CSW01_19375 | | NAD(P)-dependent oxidoreductase | 0.25 | CSW01_01470 | | permease | low | > 62 |
| Shewanella oneidensis MR-1 | 0.20 | SO4141 | | oxidoreductase, short-chain dehydrogenase/reductase family (NCBI ptt file) | 0.22 | SO1771 | | permease, GntP family (NCBI ptt file) | low | > 76 |