Conservation of cofitness between PP_2029 and PP_2148 in Pseudomonas putida KT2440

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2029 von Willebrand factor type A domain protein 1.0 PP_2148 transcription-repair coupling factor 0.47 8
Pseudomonas simiae WCS417 0.74 PS417_15100 BatB protein 0.87 PS417_07635 transcription-repair coupling factor low > 88
Pseudomonas fluorescens FW300-N2E2 0.73 Pf6N2E2_622 BatA (Bacteroides aerotolerance operon) 0.89 Pf6N2E2_2278 Transcription-repair coupling factor low > 103
Pseudomonas fluorescens SBW25 0.73 PFLU_RS17120 VWA domain-containing protein 0.87 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas fluorescens SBW25-INTG 0.73 PFLU_RS17120 VWA domain-containing protein 0.87 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas sp. RS175 0.71 PFR28_01592 hypothetical protein 0.89 PFR28_01123 Transcription-repair-coupling factor low > 88
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_3303 BatA (Bacteroides aerotolerance operon) 0.87 PfGW456L13_4027 Transcription-repair coupling factor low > 87
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_4637 BatA (Bacteroides aerotolerance operon) 0.87 Pf1N1B4_3916 Transcription-repair coupling factor — —
Pseudomonas fluorescens FW300-N2E3 0.70 AO353_23720 BatB protein 0.89 AO353_00435 transcription-repair coupling factor low > 101
Pseudomonas fluorescens FW300-N2C3 0.70 AO356_24650 BatB protein 0.89 AO356_02270 transcription-repair coupling factor 0.65 10
Pseudomonas syringae pv. syringae B728a ΔmexB 0.66 Psyr_1718 von Willebrand factor, type A 0.87 Psyr_1896 transcription-repair coupling factor low > 86
Pseudomonas syringae pv. syringae B728a 0.66 Psyr_1718 von Willebrand factor, type A 0.87 Psyr_1896 transcription-repair coupling factor low > 86
Pseudomonas stutzeri RCH2 0.65 Psest_1940 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain 0.85 Psest_1653 transcription-repair coupling factor (mfd) low > 67
Pseudomonas sp. S08-1 0.58 OH686_22240 Aerotolerance protein BatA 0.84 OH686_21990 transcription-repair coupling factor low > 80
Alteromonas macleodii MIT1002 0.39 MIT1002_01282 VWFA-related Acidobacterial domain protein 0.57 MIT1002_01646 Transcription-repair-coupling factor low > 70
Kangiella aquimarina DSM 16071 0.38 B158DRAFT_1003 Mg-chelatase subunit ChlD 0.54 B158DRAFT_1800 transcription-repair coupling factor low > 40
Shewanella sp. ANA-3 0.37 Shewana3_1456 von Willebrand factor, type A (RefSeq) 0.55 Shewana3_2289 transcription-repair coupling factor (RefSeq) low > 73
Shewanella oneidensis MR-1 0.37 SO3093 von Willebrand factor type A domain protein (NCBI ptt file) 0.55 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) low > 76
Marinobacter adhaerens HP15 0.36 HP15_2273 von Willebrand factor type A domain protein 0.62 HP15_2257 transcription-repair-coupling factor low > 73
Shewanella amazonensis SB2B 0.35 Sama_2172 von Willebrand factor type A domain-containing protein (RefSeq) 0.55 Sama_1330 transcription-repair coupling factor (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.34 CSW01_14850 VWA domain-containing protein 0.56 CSW01_09445 transcription-repair coupling factor low > 62
Shewanella loihica PV-4 0.34 Shew_2430 von Willebrand factor, type A (RefSeq) 0.55 Shew_1630 transcription-repair coupling factor (RefSeq) low > 60
Lysobacter sp. OAE881 0.32 ABIE51_RS17145 VWA domain-containing protein 0.54 ABIE51_RS14320 transcription-repair coupling factor low > 62
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS11770 VWA domain-containing protein 0.56 ABZR86_RS21210 transcription-repair coupling factor low > 74
Rhodanobacter denitrificans FW104-10B01 0.29 LRK54_RS11875 VWA domain-containing protein 0.55 LRK54_RS02040 transcription-repair coupling factor low > 59
Rhodanobacter denitrificans MT42 0.29 LRK55_RS11600 VWA domain-containing protein 0.55 LRK55_RS01815 transcription-repair coupling factor low > 63
Xanthomonas campestris pv. campestris strain 8004 0.29 Xcc-8004.1185.1 BatA (Bacteroides aerotolerance operon) 0.53 Xcc-8004.1775.1 Transcription-repair coupling factor low > 74
Rhodanobacter sp. FW510-T8 0.29 OKGIIK_12020 chlD BatB protein 0.54 OKGIIK_09105 mfd transcription-repair coupling factor low > 52
Variovorax sp. OAS795 0.10 ABID97_RS22745 VWA domain-containing protein 0.49 ABID97_RS17285 transcription-repair coupling factor 0.39 91
Variovorax sp. SCN45 0.10 GFF6084 Aerotolerance protein BatA 0.49 GFF412 Transcription-repair coupling factor low > 127

Not shown: 4 genomes with orthologs for PP_2029 only; 58 genomes with orthologs for PP_2148 only