Conservation of cofitness between PP_5145 and PP_1702 in Pseudomonas putida KT2440

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5145 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) 1.0 PP_1702 Recombination-associated protein RdgC 0.38 17
Pseudomonas fluorescens FW300-N1B4 0.94 Pf1N1B4_2284 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated 0.86 Pf1N1B4_3731 DNA recombination-dependent growth factor C — —
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_953 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated 0.85 PfGW456L13_4216 DNA recombination-dependent growth factor C low > 87
Pseudomonas sp. RS175 0.93 PFR28_04830 Phosphoenolpyruvate-dependent phosphotransferase system 0.85 PFR28_03182 Recombination-associated protein RdgC low > 88
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_10350 phosphoenolpyruvate-protein phosphotransferase 0.86 AO356_19265 recombination-associated protein RdgC low > 104
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_3942 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated 0.86 Pf6N2E2_5768 DNA recombination-dependent growth factor C low > 103
Pseudomonas fluorescens FW300-N2E3 0.93 AO353_08465 phosphoenolpyruvate-protein phosphotransferase 0.87 AO353_02515 recombination-associated protein RdgC low > 101
Pseudomonas syringae pv. syringae B728a 0.93 Psyr_4842 Phosphoenolpyruvate-protein phosphotransferase 0.86 Psyr_1588 Putative exonuclease, RdgC low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.93 Psyr_4842 Phosphoenolpyruvate-protein phosphotransferase 0.86 Psyr_1588 Putative exonuclease, RdgC low > 86
Pseudomonas fluorescens SBW25-INTG 0.92 PFLU_RS28645 phosphoenolpyruvate--protein phosphotransferase 0.84 PFLU_RS09255 recombination-associated protein RdgC low > 109
Pseudomonas fluorescens SBW25 0.92 PFLU_RS28645 phosphoenolpyruvate--protein phosphotransferase 0.84 PFLU_RS09255 recombination-associated protein RdgC low > 109
Pseudomonas simiae WCS417 0.91 PS417_26985 phosphoenolpyruvate-protein phosphotransferase 0.85 PS417_09245 recombinase RdgC low > 88
Pseudomonas sp. S08-1 0.87 OH686_11430 Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated 0.79 OH686_19640 DNA recombination-dependent growth factor RdgC low > 80
Pseudomonas stutzeri RCH2 0.86 Psest_3862 phosphoenolpyruvate-protein phosphotransferase 0.78 Psest_1532 DNA recombination-dependent growth factor C low > 67
Marinobacter adhaerens HP15 0.68 HP15_463 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain protein 0.43 HP15_1221 recombination-associated protein rdgC low > 73
Alteromonas macleodii MIT1002 0.45 MIT1002_00648 Phosphoenolpyruvate-protein phosphotransferase 0.31 MIT1002_00749 Recombination-associated protein RdgC low > 70
Shewanella amazonensis SB2B 0.41 Sama_0864 phosphoenolpyruvate-protein phosphotransferase PtsP (RefSeq) 0.41 Sama_1072 rdgC recombination associated protein (RefSeq) low > 62
Shewanella loihica PV-4 0.41 Shew_1039 phosphoenolpyruvate-protein phosphotransferase PtsP (RefSeq) 0.39 Shew_2751 rdgC recombination associated protein (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.41 CSW01_03525 phosphoenolpyruvate-protein phosphotransferase PtsP 0.43 CSW01_03755 recombination-associated protein RdgC low > 62
Shewanella sp. ANA-3 0.41 Shewana3_3042 phosphoenolpyruvate-protein phosphotransferase PtsP (RefSeq) 0.39 Shewana3_2881 rdgC recombination associated protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.40 SO1332 ptsP phosphoenolpyruvate-protein phosphotransferase PtsP (NCBI ptt file) 0.39 SO1556 conserved hypothetical protein (NCBI ptt file) low > 76
Rahnella sp. WP5 0.40 EX31_RS13200 phosphoenolpyruvate--protein phosphotransferase 0.44 EX31_RS21990 recombination-associated protein RdgC low > 89
Serratia liquefaciens MT49 0.39 IAI46_20450 phosphoenolpyruvate--protein phosphotransferase 0.43 IAI46_04710 recombination-associated protein RdgC low > 86
Erwinia tracheiphila SCR3 0.39 LU632_RS06110 ptsP phosphoenolpyruvate--protein phosphotransferase 0.42 LU632_RS18955 rdgC recombination-associated protein RdgC low > 74
Escherichia fergusonii Becca 0.39 EFB2_01055 Phosphoenolpyruvate-dependent phosphotransferase system 0.45 EFB2_03663 Recombination-associated protein RdgC low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_00901 Phosphoenolpyruvate-dependent phosphotransferase system 0.45 OHPLBJKB_03282 Recombination-associated protein RdgC low > 73
Escherichia coli ECRC102 0.39 NIAGMN_17775 ptsP phosphoenolpyruvate--protein phosphotransferase 0.45 NIAGMN_06625 rdgC recombination-associated protein RdgC — —
Escherichia coli ECOR27 0.39 NOLOHH_11890 ptsP phosphoenolpyruvate--protein phosphotransferase 0.45 NOLOHH_01500 rdgC recombination-associated protein RdgC low > 57
Escherichia coli ECRC99 0.39 KEDOAH_08125 ptsP phosphoenolpyruvate--protein phosphotransferase 0.45 KEDOAH_19395 rdgC recombination-associated protein RdgC — —
Escherichia coli Nissle 1917 0.39 ECOLIN_RS15875 phosphoenolpyruvate--protein phosphotransferase 0.45 ECOLIN_RS02385 recombination-associated protein RdgC low > 52
Escherichia coli ECRC98 0.39 JDDGAC_23670 ptsP phosphoenolpyruvate--protein phosphotransferase 0.45 JDDGAC_12225 rdgC recombination-associated protein RdgC — —
Escherichia coli ECRC101 0.39 MCAODC_10530 ptsP phosphoenolpyruvate--protein phosphotransferase 0.45 MCAODC_27795 rdgC recombination-associated protein RdgC — —
Escherichia coli ECRC101 0.39 OKFHMN_20005 ptsP phosphoenolpyruvate--protein phosphotransferase 0.45 OKFHMN_08570 rdgC recombination-associated protein RdgC — —
Escherichia coli ECOR38 0.39 HEPCGN_19260 ptsP phosphoenolpyruvate--protein phosphotransferase 0.45 HEPCGN_07210 rdgC recombination-associated protein RdgC low > 85
Escherichia coli ECRC62 0.39 BNILDI_10370 ptsP phosphoenolpyruvate--protein phosphotransferase 0.45 BNILDI_22915 rdgC recombination-associated protein RdgC — —
Escherichia coli BL21 0.39 ECD_02677 PEP-protein phosphotransferase enzyme I; GAF domain containing protein 0.45 ECD_00342 nucleoid-associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function low > 60
Klebsiella michiganensis M5al 0.39 BWI76_RS23270 phosphoenolpyruvate--protein phosphotransferase PtsP 0.43 BWI76_RS06205 recombination-associated protein RdgC low > 92
Escherichia coli BW25113 0.39 b2829 ptsP fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) 0.45 b0393 rdgC recombination associated protein (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.39 GFF1311 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated 0.44 GFF4290 DNA recombination-dependent growth factor C low > 78
Pantoea sp. MT58 0.38 IAI47_03920 phosphoenolpyruvate--protein phosphotransferase 0.44 IAI47_14910 recombination-associated protein RdgC low > 76
Enterobacter asburiae PDN3 0.38 EX28DRAFT_2904 phosphoenolpyruvate-protein phosphotransferase 0.43 EX28DRAFT_2579 DNA recombination-dependent growth factor C low > 76
Enterobacter sp. TBS_079 0.38 MPMX20_03692 Phosphoenolpyruvate-dependent phosphotransferase system 0.43 MPMX20_00982 Recombination-associated protein RdgC low > 85
Dickeya dadantii 3937 0.38 DDA3937_RS04950 phosphoenolpyruvate--protein phosphotransferase 0.44 DDA3937_RS05405 recombination-associated protein RdgC low > 74
Dickeya dianthicola 67-19 0.38 HGI48_RS04960 phosphoenolpyruvate--protein phosphotransferase 0.43 HGI48_RS05465 recombination-associated protein RdgC — —
Dickeya dianthicola ME23 0.38 DZA65_RS05300 phosphoenolpyruvate--protein phosphotransferase 0.43 DZA65_RS05790 recombination-associated protein RdgC low > 75
Pectobacterium carotovorum WPP14 0.37 HER17_RS16580 phosphoenolpyruvate--protein phosphotransferase 0.43 HER17_RS16060 recombination-associated protein RdgC low > 75

Not shown: 16 genomes with orthologs for PP_5145 only; 22 genomes with orthologs for PP_1702 only