Conservation of cofitness between PP_4601 and PP_1616 in Pseudomonas putida KT2440

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4601 Transcriptional regulator, LysR family 1.0 PP_1616 formaldehyde dehydrogenase, glutathione-dependent 0.27 1
Pseudomonas fluorescens FW300-N2E3 0.70 AO353_25410 LysR family transcriptional regulator 0.96 AO353_16580 S-(hydroxymethyl)glutathione dehydrogenase low > 101
Enterobacter sp. TBS_079 0.67 MPMX20_02684 Hydrogen peroxide-inducible genes activator 0.78 MPMX20_02209 S-(hydroxymethyl)glutathione dehydrogenase low > 85
Klebsiella michiganensis M5al 0.65 BWI76_RS13890 LysR family transcriptional regulator 0.78 BWI76_RS13260 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase low > 92
Enterobacter asburiae PDN3 0.64 EX28DRAFT_0784 Transcriptional regulator 0.78 EX28DRAFT_1257 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase low > 76
Pseudomonas syringae pv. syringae B728a ΔmexB 0.63 Psyr_4944 transcriptional regulator, LysR family 0.94 Psyr_1367 Zinc-containing alcohol dehydrogenase superfamily low > 86
Pseudomonas syringae pv. syringae B728a 0.63 Psyr_4944 transcriptional regulator, LysR family 0.94 Psyr_1367 Zinc-containing alcohol dehydrogenase superfamily low > 86
Pseudomonas fluorescens SBW25-INTG 0.63 PFLU_RS01370 LysR family transcriptional regulator 0.96 PFLU_RS06395 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 0.49 23
Pseudomonas fluorescens SBW25 0.63 PFLU_RS01370 LysR family transcriptional regulator 0.96 PFLU_RS06395 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase low > 109
Pseudomonas simiae WCS417 0.63 PS417_01275 LysR family transcriptional regulator 0.96 PS417_06330 S-(hydroxymethyl)glutathione dehydrogenase 0.21 68
Pseudomonas stutzeri RCH2 0.62 Psest_2420 Transcriptional regulator 0.85 Psest_2816 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase low > 67
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_10095 LysR family transcriptional regulator 0.96 AO356_05920 S-(hydroxymethyl)glutathione dehydrogenase low > 104
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_407 Hydrogen peroxide-inducible genes activator 0.97 PfGW456L13_4682 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) low > 87
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_3889 Hydrogen peroxide-inducible genes activator 0.97 Pf6N2E2_3044 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) low > 103
Pseudomonas sp. RS175 0.61 PFR28_04883 HTH-type transcriptional regulator HdfR 0.96 PFR28_00420 S-(hydroxymethyl)glutathione dehydrogenase low > 88
Pseudomonas fluorescens FW300-N1B4 0.59 Pf1N1B4_1672 Hydrogen peroxide-inducible genes activator 0.96 Pf1N1B4_3108 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) low > 87
Alteromonas macleodii MIT1002 0.46 MIT1002_01710 Morphology and auto-aggregation control protein 0.79 MIT1002_03089 S-(hydroxymethyl)glutathione dehydrogenase low > 70
Pectobacterium carotovorum WPP14 0.32 HER17_RS09440 LysR family transcriptional regulator 0.83 HER17_RS12790 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase low > 75
Rahnella sp. WP5 0.31 EX31_RS06580 LysR family transcriptional regulator 0.81 EX31_RS18715 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase low > 89
Serratia liquefaciens MT49 0.31 IAI46_13555 LysR family transcriptional regulator 0.83 IAI46_07885 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase low > 86
Dickeya dadantii 3937 0.30 DDA3937_RS12470 LysR family transcriptional regulator 0.79 DDA3937_RS09325 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase low > 74
Pantoea sp. MT58 0.28 IAI47_09345 LysR family transcriptional regulator 0.83 IAI47_06705 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase low > 76
Sinorhizobium meliloti 1021 0.27 SMc02523 transcriptional regulator 0.62 SMc01270 alcohol dehydrogenase
Rhizobium sp. OAE497 0.25 ABIE40_RS17865 LysR family transcriptional regulator 0.62 ABIE40_RS09860 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase low > 107
Azospirillum sp. SherDot2 0.25 MPMX19_03520 Hydrogen peroxide-inducible genes activator 0.82 MPMX19_05326 S-(hydroxymethyl)glutathione dehydrogenase low > 112
Rhodopseudomonas palustris CGA009 0.25 TX73_003780 LysR family transcriptional regulator 0.68 TX73_010080 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase low > 86
Shewanella sp. ANA-3 0.24 Shewana3_1874 LysR family transcriptional regulator (RefSeq) 0.83 Shewana3_1837 alcohol dehydrogenase (RefSeq) low > 73
Agrobacterium fabrum C58 0.24 Atu4705 LysR family transcriptional regulator 0.60 Atu1670 alcohol dehydrogenase class III low > 89
Azospirillum brasilense Sp245 0.23 AZOBR_RS14945 transcriptional regulator 0.87 AZOBR_RS16515 S-(hydroxymethyl)glutathione dehydrogenase low > 97
Paraburkholderia sabiae LMG 24235 0.23 QEN71_RS09575 LysR family transcriptional regulator 0.65 QEN71_RS02555 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase low > 153
Acidovorax sp. GW101-3H11 0.23 Ac3H11_3812 Hydrogen peroxide-inducible genes activator 0.75 Ac3H11_3163 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) low > 79
Variovorax sp. SCN45 0.22 GFF5628 Transcriptional regulator Daci_1847, LysR family 0.65 GFF2941 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) low > 127
Variovorax sp. OAS795 0.22 ABID97_RS07505 LysR substrate-binding domain-containing protein 0.65 ABID97_RS10235 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase low > 91
Phaeobacter inhibens DSM 17395 0.21 PGA1_c25760 transcriptional regulator, LysR family 0.61 PGA1_c02510 S-(hydroxymethyl)glutathione dehydrogenase FrmA low > 62
Burkholderia phytofirmans PsJN 0.19 BPHYT_RS00545 LysR family transcriptional regulator 0.76 BPHYT_RS00510 S-(hydroxymethyl)glutathione dehydrogenase low > 109

Not shown: 0 genomes with orthologs for PP_4601 only; 51 genomes with orthologs for PP_1616 only