Conservation of cofitness between PP_5348 and PP_0366 in Pseudomonas putida KT2440

27 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5348 Transcriptional regulator, LysR family 1.0 PP_0366 dethiobiotin synthetase 0.58 10
Pseudomonas fluorescens FW300-N2E3 0.87 AO353_10035 LysR family transcriptional regulator 0.77 AO353_07505 dethiobiotin synthetase 0.71 33
Pseudomonas sp. RS175 0.86 PFR28_04519 HTH-type transcriptional activator CmpR 0.77 PFR28_04099 ATP-dependent dethiobiotin synthetase BioD 1 — —
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_12015 LysR family transcriptional regulator 0.77 AO356_14155 dethiobiotin synthetase 0.49 67
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_2009 LysR family transcriptional regulator PA5437 0.78 Pf1N1B4_2491 Dethiobiotin synthetase (EC 6.3.3.3) 0.46 77
Pseudomonas simiae WCS417 0.84 PS417_28220 LysR family transcriptional regulator 0.76 PS417_25985 dethiobiotin synthetase low > 88
Pseudomonas fluorescens SBW25-INTG 0.84 PFLU_RS29885 LysR family transcriptional regulator 0.77 PFLU_RS27630 dethiobiotin synthase 0.54 9
Pseudomonas fluorescens SBW25 0.84 PFLU_RS29885 LysR family transcriptional regulator 0.77 PFLU_RS27630 dethiobiotin synthase low > 109
Pseudomonas fluorescens GW456-L13 0.84 PfGW456L13_727 LysR family transcriptional regulator PA5437 0.79 PfGW456L13_1151 Dethiobiotin synthetase (EC 6.3.3.3) 0.64 33
Pseudomonas fluorescens FW300-N2E2 0.83 Pf6N2E2_4277 LysR family transcriptional regulator PA5437 0.77 Pf6N2E2_4764 Dethiobiotin synthetase (EC 6.3.3.3) 0.52 51
Pseudomonas syringae pv. syringae B728a 0.80 Psyr_5062 transcriptional regulator, LysR family 0.72 Psyr_4683 dethiobiotin synthase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.80 Psyr_5062 transcriptional regulator, LysR family 0.72 Psyr_4683 dethiobiotin synthase low > 86
Pseudomonas stutzeri RCH2 0.74 Psest_4086 Transcriptional regulator 0.62 Psest_0415 dethiobiotin synthase 0.65 8
Pseudomonas sp. S08-1 0.71 OH686_13195 Transcriptional regulator, LysR family 0.72 OH686_10335 dethiobiotin synthase low > 80
Synechococcus elongatus PCC 7942 0.38 Synpcc7942_1310 cmpR ndhF3 operon transcriptional regulator 0.15 Synpcc7942_0030 bioD dethiobiotin synthase — —
Paraburkholderia bryophila 376MFSha3.1 0.35 H281DRAFT_03013 transcriptional regulator, LysR family 0.34 H281DRAFT_02096 dethiobiotin synthetase low > 103
Paraburkholderia graminis OAS925 0.34 ABIE53_005077 DNA-binding transcriptional LysR family regulator 0.34 ABIE53_000578 dethiobiotin synthetase low > 113
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS29890 LysR family transcriptional regulator 0.37 BPHYT_RS02155 dithiobiotin synthetase low > 109
Paraburkholderia sabiae LMG 24235 0.33 QEN71_RS20425 LysR family transcriptional regulator 0.32 QEN71_RS01090 dethiobiotin synthase — —
Shewanella loihica PV-4 0.33 Shew_1245 LysR family transcriptional regulator (RefSeq) 0.53 Shew_1722 dethiobiotin synthase (RefSeq) — —
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS31340 transcriptional regulator 0.28 RR42_RS00935 dethiobiotin synthetase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF2192 Cys regulon transcriptional activator CysB 0.42 GFF3994 Dethiobiotin synthetase (EC 6.3.3.3) — —
Acidovorax sp. GW101-3H11 0.31 Ac3H11_3174 RuBisCO operon transcriptional regulator 0.35 Ac3H11_3829 Dethiobiotin synthetase (EC 6.3.3.3) low > 79
Variovorax sp. OAS795 0.31 ABID97_RS24450 LysR family transcriptional regulator 0.37 ABID97_RS16255 dethiobiotin synthase — —
Dechlorosoma suillum PS 0.30 Dsui_2869 transcriptional regulator 0.43 Dsui_2884 dethiobiotin synthase low > 51
Shewanella amazonensis SB2B 0.24 Sama_0693 RuBisCo operon transcriptional regulator (RefSeq) 0.42 Sama_1441 bioD dithiobiotin synthetase (RefSeq) — —
Shewanella oneidensis MR-1 0.23 SO3757 rbcR rubisco operon transcriptional regulator (NCBI ptt file) 0.51 SO2737 bioD dethiobiotin synthase (NCBI ptt file) — —
Shewanella sp. ANA-3 0.22 Shewana3_0835 LysR family transcriptional regulator (RefSeq) 0.51 Shewana3_2516 bioD dithiobiotin synthetase (RefSeq) — —

Not shown: 4 genomes with orthologs for PP_5348 only; 55 genomes with orthologs for PP_0366 only