Conservation of cofitness between PFLU_RS09095 and PFLU_RS26135 in Pseudomonas fluorescens SBW25

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens SBW25 1.0 PFLU_RS09095 AI-2E family transporter 1.0 PFLU_RS26135 TIGR00645 family protein 0.49 18
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS09095 AI-2E family transporter 1.00 PFLU_RS26135 TIGR00645 family protein low > 109
Pseudomonas simiae WCS417 0.99 PS417_09040 hypothetical protein 1.00 PS417_24215 hypothetical protein — —
Pseudomonas fluorescens FW300-N2E2 0.86 Pf6N2E2_5882 Putative membrane protein 0.88 Pf6N2E2_5095 Putative inner membrane protein (Fragment) low > 103
Pseudomonas fluorescens FW300-N2C3 0.86 AO356_19830 hypothetical protein 0.89 AO356_15775 hypothetical protein low > 104
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_2055 Putative membrane protein 0.89 PfGW456L13_1462 Putative inner membrane protein (Fragment) low > 87
Pseudomonas sp. RS175 0.84 PFR28_03068 Putative transport protein YdiK 0.89 PFR28_03777 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N1B4 0.84 Pf1N1B4_3528 Putative membrane protein 0.88 Pf1N1B4_2791 Putative inner membrane protein (Fragment) low > 87
Pseudomonas fluorescens FW300-N2E3 0.84 AO353_01690 hypothetical protein 0.87 AO353_14070 hypothetical protein low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.80 Psyr_2029 Protein of unknown function UPF0118 0.86 Psyr_4257 Uncharacterized protein UPF0114 low > 86
Pseudomonas syringae pv. syringae B728a 0.80 Psyr_2029 Protein of unknown function UPF0118 0.86 Psyr_4257 Uncharacterized protein UPF0114 low > 86
Pseudomonas putida KT2440 0.78 PP_4162 conserved membrane protein of unknown function 0.82 PP_0682 conserved inner membrane protein of unknown function, UPF0114 family low > 96
Pseudomonas sp. S08-1 0.68 OH686_01920 Uncharacterized UPF0118 membrane protein 0.83 OH686_16270 Putative inner membrane protein low > 80
Pseudomonas stutzeri RCH2 0.67 Psest_2464 Predicted permease 0.77 Psest_3394 TIGR00645 family protein low > 67
Paraburkholderia graminis OAS925 0.38 ABIE53_001629 putative PurR-regulated permease PerM 0.39 ABIE53_001663 uncharacterized protein (TIGR00645 family) low > 113
Burkholderia phytofirmans PsJN 0.38 BPHYT_RS06810 membrane protein 0.39 BPHYT_RS06990 membrane protein low > 109
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_04605 Predicted PurR-regulated permease PerM 0.39 H281DRAFT_04955 TIGR00645 family protein — —
Dechlorosoma suillum PS 0.37 Dsui_0423 putative permease 0.41 Dsui_2002 TIGR00645 family protein low > 51
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS23970 AI-2E family transporter 0.41 QEN71_RS23775 TIGR00645 family protein low > 153
Escherichia coli BL21 0.29 ECD_01657 UPF0118 family inner membrane protein 0.81 ECD_02877 UPF0114 family putative inner membrane protein low > 61
Escherichia coli ECRC102 0.29 NIAGMN_00840 ydiK AI-2E family transporter YdiK 0.81 NIAGMN_16750 yqhA UPF0114 protein YqhA — —
Escherichia coli ECOR27 0.29 NOLOHH_17745 ydiK AI-2E family transporter YdiK 0.81 NOLOHH_10760 yqhA UPF0114 protein YqhA low > 75
Escherichia fergusonii Becca 0.29 EFB2_02304 Putative transport protein YdiK 0.81 EFB2_00806 hypothetical protein low > 86
Escherichia coli ECRC98 0.29 JDDGAC_01800 ydiK AI-2E family transporter YdiK 0.81 JDDGAC_22620 yqhA UPF0114 protein YqhA low > 86
Escherichia coli BW25113 0.29 b1688 ydiK predicted inner membrane protein (NCBI) 0.81 b3002 yqhA hypothetical protein (NCBI) low > 76
Escherichia coli ECRC62 0.29 BNILDI_16535 ydiK AI-2E family transporter YdiK 0.81 BNILDI_00755 yqhA UPF0114 protein YqhA low > 75
Escherichia coli ECRC99 0.29 KEDOAH_00885 ydiK AI-2E family transporter YdiK 0.81 KEDOAH_09160 yqhA UPF0114 protein YqhA — —
Escherichia coli ECRC100 0.29 OKFHMN_27225 ydiK AI-2E family transporter YdiK 0.81 OKFHMN_18985 yqhA UPF0114 protein YqhA low > 80
Escherichia coli Nissle 1917 0.29 ECOLIN_RS09435 AI-2E family transporter YdiK 0.81 ECOLIN_RS17290 TIGR00645 family protein — —
Escherichia coli ECOR38 0.29 HEPCGN_05610 ydiK AI-2E family transporter YdiK 0.81 HEPCGN_17845 yqhA UPF0114 protein YqhA low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_02036 Putative transport protein YdiK 0.81 OHPLBJKB_00697 hypothetical protein low > 73
Escherichia coli ECRC101 0.29 MCAODC_18185 ydiK AI-2E family transporter YdiK 0.81 MCAODC_09500 yqhA UPF0114 protein YqhA low > 87
Dickeya dadantii 3937 0.29 DDA3937_RS12800 AI-2E family transporter YdiK 0.73 DDA3937_RS04680 TIGR00645 family protein low > 74
Dickeya dianthicola ME23 0.29 DZA65_RS13330 AI-2E family transporter YdiK 0.74 DZA65_RS04555 TIGR00645 family protein low > 75
Enterobacter sp. TBS_079 0.29 MPMX20_01925 Putative transport protein YdiK 0.83 MPMX20_03846 hypothetical protein low > 85
Klebsiella michiganensis M5al 0.29 BWI76_RS17055 hypothetical protein 0.81 BWI76_RS24270 membrane protein low > 92
Enterobacter asburiae PDN3 0.29 EX28DRAFT_1697 Predicted permease 0.82 EX28DRAFT_3040 TIGR00645 family protein low > 76
Pectobacterium carotovorum WPP14 0.28 HER17_RS08900 AI-2E family transporter YdiK 0.72 HER17_RS19160 TIGR00645 family protein low > 75
Erwinia tracheiphila SCR3 0.28 LU632_RS11035 ydiK AI-2E family transporter YdiK 0.77 LU632_RS00860 TIGR00645 family protein low > 74
Dickeya dianthicola 67-19 0.28 HGI48_RS12865 AI-2E family transporter YdiK 0.74 HGI48_RS04635 TIGR00645 family protein low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.27 GFF3553 Putative membrane protein 0.78 GFF3112 Putative membrane protein low > 78
Pantoea sp. MT58 0.27 IAI47_10895 AI-2E family transporter YdiK 0.76 IAI47_01255 TIGR00645 family protein low > 76
Serratia liquefaciens MT49 0.27 IAI46_11125 AI-2E family transporter YdiK 0.78 IAI46_12210 TIGR00645 family protein low > 86
Rhizobium sp. OAE497 0.25 ABIE40_RS23785 AI-2E family transporter 0.45 ABIE40_RS13435 TIGR00645 family protein low > 107
Azospirillum brasilense Sp245 0.19 AZOBR_RS27390 transporter 0.50 AZOBR_RS06580 hypothetical protein low > 97
Shewanella sp. ANA-3 0.19 Shewana3_2910 hypothetical protein (RefSeq) 0.68 Shewana3_0644 hypothetical protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.18 SO0472 membrane protein, putative (NCBI ptt file) 0.68 SO3997 conserved hypothetical protein TIGR00645 (NCBI ptt file) low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.17 GFF3026 putative membrane protein 0.38 GFF4106 putative membrane protein low > 90
Agrobacterium fabrum C58 0.17 Atu1739 permease 0.46 Atu2286 hypothetical protein low > 89

Not shown: 6 genomes with orthologs for PFLU_RS09095 only; 19 genomes with orthologs for PFLU_RS26135 only