| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens SBW25 | 1.0 | PFLU_RS07240 | | sigma factor AlgU regulatory protein MucB | 1.0 | PFLU_RS01390 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.65 | 4 |
| Pseudomonas fluorescens SBW25-INTG | 1.00 | PFLU_RS07240 | | sigma factor AlgU regulatory protein MucB | 1.00 | PFLU_RS01390 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | low | > 109 |
| Pseudomonas simiae WCS417 | 0.92 | PS417_07130 | | RNA polymerase sigma-H factor AlgU | 0.99 | PS417_01295 | | adenosine-3'(2'),5'-bisphosphate nucleotidase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.76 | AO353_17635 | | RNA polymerase subunit sigma | 0.84 | AO353_11850 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.75 | Pf1N1B4_3325 | | Sigma factor RpoE negative regulatory protein RseB precursor | 0.83 | Pf1N1B4_1668 | | 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.75 | PfGW456L13_4514 | | Sigma factor RpoE negative regulatory protein RseB precursor | 0.83 | PfGW456L13_403 | | 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.72 | AO356_04565 | | RNA polymerase subunit sigma | 0.77 | AO356_10075 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.71 | Pf6N2E2_2754 | | Sigma factor RpoE negative regulatory protein RseB precursor | 0.77 | Pf6N2E2_3885 | | 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) | low | > 103 |
| Pseudomonas sp. RS175 | 0.70 | PFR28_00692 | | Sigma factor AlgU regulatory protein MucB | 0.77 | PFR28_04887 | | '3'(2'),5'-bisphosphate nucleotidase CysQ' transl_table=11 | low | > 88 |
| Pseudomonas putida KT2440 | 0.61 | PP_1429 | | Sigma factor AlgU regulatory protein MucB | 0.73 | PP_0261 | | adenosine-3'(2'),5'-bisphosphate nucleotidase | low | > 96 |
| Pseudomonas syringae pv. syringae B728a | 0.58 | Psyr_3956 | | sigma E regulatory protein, MucB/RseB | 0.78 | Psyr_4940 | | 3'(2'),5'-bisphosphate nucleotidase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.58 | Psyr_3956 | | sigma E regulatory protein, MucB/RseB | 0.78 | Psyr_4940 | | 3'(2'),5'-bisphosphate nucleotidase | — | — |
| Pseudomonas stutzeri RCH2 | 0.51 | Psest_3098 | | Negative regulator of sigma E activity | 0.67 | Psest_3960 | | 3'(2'),5'-bisphosphate nucleotidase, bacterial | — | — |
| Pseudomonas sp. S08-1 | 0.51 | OH686_20055 | | Sigma factor RpoE negative regulatory protein RseB precursor | 0.66 | OH686_14315 | | 3'(2'),5'-bisphosphate nucleotidase | — | — |
| Marinobacter adhaerens HP15 | 0.22 | HP15_777 | | sigma E regulatory protein, MucB/RseB | 0.38 | HP15_2405 | | 3'(2'), 5'-bisphosphate nucleotidase | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.17 | CSW01_12475 | | sigma-E factor regulatory protein RseB | 0.36 | CSW01_13735 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | — | — |
| Shewanella amazonensis SB2B | 0.16 | Sama_0876 | | putative sigma E regulatory protein, MucB/RseB (RefSeq) | 0.40 | Sama_2232 | | cysQ protein (RefSeq) | 0.44 | 34 |
| Shewanella sp. ANA-3 | 0.15 | Shewana3_3030 | | sigma E regulatory protein, MucB/RseB (RefSeq) | 0.42 | Shewana3_2791 | | 3'(2'),5'-bisphosphate nucleotidase (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.15 | SO1344 | rseB | sigma-E factor regulatory protein RseB (NCBI ptt file) | 0.40 | SO1655 | cysQ-2 | cysQ protein (NCBI ptt file) | low | > 76 |
| Pantoea sp. MT58 | 0.15 | IAI47_04860 | | sigma-E factor regulatory protein RseB | 0.36 | IAI47_02695 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | low | > 76 |
| Shewanella loihica PV-4 | 0.15 | Shew_1050 | | sigma E regulatory protein, MucB/RseB (RefSeq) | 0.43 | Shew_1427 | | 3'(2'),5'-bisphosphate nucleotidase (RefSeq) | low | > 60 |
| Dickeya dianthicola 67-19 | 0.14 | HGI48_RS15840 | | sigma-E factor regulatory protein RseB | 0.34 | HGI48_RS17235 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | low | > 71 |
| Dickeya dianthicola ME23 | 0.14 | DZA65_RS16920 | | sigma-E factor regulatory protein RseB | 0.34 | DZA65_RS18320 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | low | > 75 |
| Dickeya dadantii 3937 | 0.14 | DDA3937_RS15755 | | sigma-E factor regulatory protein RseB | 0.33 | DDA3937_RS17180 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.14 | GFF2109 | | Sigma factor RpoE negative regulatory protein RseB precursor | 0.35 | GFF868 | | '3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)' transl_table=11 | low | > 78 |
| Enterobacter sp. TBS_079 | 0.13 | MPMX20_03442 | | Sigma-E factor regulatory protein RseB | 0.35 | MPMX20_00492 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | low | > 85 |
| Klebsiella michiganensis M5al | 0.13 | BWI76_RS21345 | | sigma-E factor regulatory protein RseB | 0.36 | BWI76_RS02735 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | low | > 92 |
| Enterobacter asburiae PDN3 | 0.13 | EX28DRAFT_0074 | | sigma E regulatory protein, MucB/RseB | 0.36 | EX28DRAFT_3401 | | 3'(2'),5'-bisphosphate nucleotidase, bacterial | low | > 76 |
| Rahnella sp. WP5 | 0.13 | EX31_RS21810 | | sigma-E factor regulatory protein RseB | 0.36 | EX31_RS08720 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | low | > 89 |
| Escherichia coli BW25113 | 0.13 | b2571 | rseB | periplasmic negative regulator of sigmaE (NCBI) | 0.35 | b4214 | cysQ | PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase (NCBI) | low | > 76 |
| Escherichia coli ECRC99 | 0.13 | KEDOAH_06835 | rseB | sigma-E factor regulatory protein RseB | 0.35 | KEDOAH_16120 | cysQ | 3'(2'),5'-bisphosphate nucleotidase CysQ | — | — |
| Escherichia coli BL21 | 0.13 | ECD_02465 | | anti-sigma E factor, binds RseA | 0.35 | ECD_04086 | | 3'(2'),5'-bisphosphate nucleotidase | low | > 61 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.13 | OHPLBJKB_01136 | | Sigma-E factor regulatory protein RseB | 0.35 | OHPLBJKB_03819 | | '3'(2'),5'-bisphosphate nucleotidase CysQ' transl_table=11 | low | > 73 |
| Escherichia coli ECRC101 | 0.13 | MCAODC_11915 | rseB | sigma-E factor regulatory protein RseB | 0.35 | MCAODC_02550 | cysQ | 3'(2'),5'-bisphosphate nucleotidase CysQ | low | > 87 |
| Escherichia coli ECRC62 | 0.13 | BNILDI_11860 | rseB | sigma-E factor regulatory protein RseB | 0.35 | BNILDI_07225 | cysQ | 3'(2'),5'-bisphosphate nucleotidase CysQ | low | > 75 |
| Escherichia fergusonii Becca | 0.13 | EFB2_01325 | | Sigma-E factor regulatory protein RseB | 0.35 | EFB2_04314 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | low | > 86 |
| Escherichia coli ECRC100 | 0.13 | OKFHMN_21385 | rseB | sigma-E factor regulatory protein RseB | 0.35 | OKFHMN_12035 | cysQ | 3'(2'),5'-bisphosphate nucleotidase CysQ | low | > 80 |
| Escherichia coli ECOR38 | 0.13 | HEPCGN_20530 | rseB | sigma-E factor regulatory protein RseB | 0.35 | HEPCGN_10230 | cysQ | 3'(2'),5'-bisphosphate nucleotidase CysQ | low | > 87 |
| Escherichia coli ECRC98 | 0.13 | JDDGAC_25050 | rseB | sigma-E factor regulatory protein RseB | 0.35 | JDDGAC_15675 | cysQ | 3'(2'),5'-bisphosphate nucleotidase CysQ | low | > 86 |
| Escherichia coli ECRC102 | 0.13 | NIAGMN_19155 | rseB | sigma-E factor regulatory protein RseB | 0.35 | NIAGMN_09885 | cysQ | 3'(2'),5'-bisphosphate nucleotidase CysQ | — | — |
| Escherichia coli ECOR27 | 0.13 | NOLOHH_13060 | rseB | sigma-E factor regulatory protein RseB | 0.35 | NOLOHH_04295 | cysQ | 3'(2'),5'-bisphosphate nucleotidase CysQ | low | > 75 |
| Escherichia coli Nissle 1917 | 0.13 | ECOLIN_RS14550 | | sigma-E factor regulatory protein RseB | 0.35 | ECOLIN_RS24480 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | low | > 55 |
| Erwinia tracheiphila SCR3 | 0.13 | LU632_RS15415 | rseB | sigma-E factor regulatory protein RseB | 0.37 | LU632_RS02085 | cysQ | 3'(2'),5'-bisphosphate nucleotidase CysQ | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.13 | HER17_RS05790 | | sigma-E factor regulatory protein RseB | 0.35 | HER17_RS03955 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | low | > 75 |
| Serratia liquefaciens MT49 | 0.12 | IAI46_19575 | | sigma-E factor regulatory protein RseB | 0.34 | IAI46_01745 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | low | > 86 |
Not shown: 16 genomes with orthologs for PFLU_RS07240 only; 33 genomes with orthologs for PFLU_RS01390 only