| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Azospirillum sp. SherDot2 | 1.0 | MPMX19_05973 | | hypothetical protein | 1.0 | MPMX19_00794 | | Transcriptional activator protein CopR | 0.39 | 16 |
| Pseudomonas orientalis W4I3 | 0.74 | QF045_RS17930 | | ABC transporter substrate-binding protein | 0.52 | QF045_RS14560 | | response regulator transcription factor | low | > 93 |
| Pseudomonas fluorescens SBW25-INTG | 0.74 | PFLU_RS18245 | | carbohydrate ABC transporter substrate-binding protein | 0.52 | PFLU_RS12570 | | response regulator transcription factor | low | > 109 |
| Pseudomonas sp. S08-1 | 0.74 | OH686_03675 | | Glycerol ABC transporter, substrate-binding protein GlpV | 0.51 | OH686_22680 | | Copper-sensing two-component system response regulator CusR | low | > 80 |
| Pseudomonas fluorescens SBW25 | 0.74 | PFLU_RS18245 | | carbohydrate ABC transporter substrate-binding protein | 0.52 | PFLU_RS12570 | | response regulator transcription factor | low | > 109 |
| Pseudomonas lactucae CFBP13502 | 0.74 | GEMAOFIL_03525 | | hypothetical protein | 0.52 | GEMAOFIL_02648 | | Transcriptional regulatory protein CusR | low | > 96 |
| Pseudomonas simiae WCS417 | 0.74 | PS417_16215 | | ABC transporter substrate-binding protein | 0.52 | PS417_11825 | | transcriptional regulator | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.74 | PfGW456L13_2617 | | Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3) | 0.51 | PfGW456L13_4017 | | Copper-sensing two-component system response regulator CusR | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.74 | Pf6N2E2_108 | | Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3) | 0.52 | Pf6N2E2_504 | | DNA-binding response regulator | low | > 103 |
| Pseudomonas sp. BP01 | 0.74 | JOY50_RS25955 | | ABC transporter substrate-binding protein | 0.53 | JOY50_RS27375 | | response regulator transcription factor | low | > 84 |
| Rhodopseudomonas palustris CGA009 | 0.74 | TX73_022830 | | ABC transporter substrate-binding protein | 0.67 | TX73_009945 | | response regulator transcription factor | low | > 86 |
| Pseudomonas sp. DMC3 | 0.73 | GFF1499 | | hypothetical protein | 0.53 | GFF1578 | | Transcriptional regulatory protein CusR | low | > 89 |
| Pseudomonas sp. SVBP6 | 0.73 | COO64_RS19110 | | ABC transporter substrate-binding protein | 0.54 | COO64_RS09985 | | response regulator transcription factor | low | > 93 |
| Pseudomonas segetis P6 | 0.73 | MPMX49_02255 | | hypothetical protein | 0.48 | MPMX49_00050 | | Transcriptional activator protein CopR | low | > 75 |
| Pseudomonas fluorescens FW300-N2C3 | 0.73 | AO356_21635 | | ABC transporter substrate-binding protein | 0.52 | AO356_23125 | | transcriptional regulator | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.73 | Pf1N1B4_4013 | | Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3) | 0.51 | Pf1N1B4_67 | | Copper-sensing two-component system response regulator CusR | — | — |
| Pseudomonas putida KT2440 | 0.73 | PP_2264 | | putative Sugar ABC transporter, periplasmic sugar-binding protein | 0.53 | PP_2907 | | DNA-binding response regulator | low | > 96 |
| Marinobacter adhaerens HP15 | 0.73 | HP15_2158 | | ABC-type sugar transport system, periplasmic component | 0.72 | HP15_3484 | | DNA-binding response regulator | — | — |
| Azospirillum brasilense Sp245 | 0.72 | AZOBR_RS25900 | | ABC transporter substrate-binding protein | 0.94 | AZOBR_RS10800 | | XRE family transcriptional regulator | low | > 97 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.71 | Psyr_1742 | | carbohydrate ABC transporter substrate-binding protein, CUT1 family | 0.51 | Psyr_3127 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.71 | Psyr_1742 | | carbohydrate ABC transporter substrate-binding protein, CUT1 family | 0.51 | Psyr_3127 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | low | > 86 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.70 | GFF2814 | | Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3) | 0.56 | GFF1757 | | response regulator in two-component regulatory system with PhoQ | low | > 90 |
| Ralstonia solanacearum UW163 | 0.70 | UW163_RS06230 | | carbohydrate ABC transporter substrate-binding protein | 0.49 | UW163_RS21995 | | DNA-binding response regulator | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.70 | RALBFv3_RS07390 | | carbohydrate ABC transporter substrate-binding protein | 0.49 | RALBFv3_RS20860 | | DNA-binding response regulator | low | > 76 |
| Acidovorax sp. GW101-3H11 | 0.70 | Ac3H11_796 | | ABC transporter for Glycerol, periplasmic substrate-binding component (from data) | 0.47 | Ac3H11_4210 | | DNA-binding heavy metal response regulator | low | > 79 |
| Ralstonia solanacearum GMI1000 | 0.70 | RS_RS15330 | | carbohydrate ABC transporter substrate-binding protein | 0.49 | RS_RS20255 | | DNA-binding response regulator | low | > 80 |
| Herbaspirillum seropedicae SmR1 | 0.69 | HSERO_RS04870 | | glycerol ABC transporter, substrate-binding component (from data) | 0.48 | HSERO_RS12420 | | transcriptional regulator | low | > 78 |
| Ralstonia sp. UNC404CL21Col | 0.69 | ABZR87_RS03050 | | ABC transporter substrate-binding protein | 0.46 | ABZR87_RS21725 | | heavy metal response regulator transcription factor | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.69 | RPSI07_RS09855 | | carbohydrate ABC transporter substrate-binding protein | 0.49 | RPSI07_RS02355 | | DNA-binding response regulator | low | > 81 |
| Cupriavidus basilensis FW507-4G11 | 0.69 | RR42_RS13765 | | ABC transporter substrate-binding protein | 0.49 | RR42_RS31535 | | transcriptional regulator | low | > 128 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.68 | H281DRAFT_03729 | | carbohydrate ABC transporter substrate-binding protein, CUT1 family | 0.51 | H281DRAFT_01736 | | two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.68 | QEN71_RS10180 | | ABC transporter substrate-binding protein | 0.53 | QEN71_RS15305 | | heavy metal response regulator transcription factor | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.68 | BPHYT_RS33275 | | ABC transporter substrate-binding protein | 0.55 | BPHYT_RS25955 | | transcriptional regulator | low | > 109 |
| Rhizobium sp. OAE497 | 0.64 | ABIE40_RS25670 | | ABC transporter substrate-binding protein | 0.67 | ABIE40_RS05700 | | response regulator transcription factor | low | > 107 |
| Agrobacterium fabrum C58 | 0.64 | Atu3891 | | hypothetical protein | 0.67 | Atu0978 | | two component response regulator | low | > 89 |
| Sinorhizobium meliloti 1021 | 0.63 | SMc02514 | | periplasmic binding ABC transporter protein | 0.68 | SMc02366 | | transcriptional regulator | low | > 103 |
Not shown: 4 genomes with orthologs for MPMX19_05973 only; 65 genomes with orthologs for MPMX19_00794 only