| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Azospirillum sp. SherDot2 | 1.0 | MPMX19_01646 | | L-lactate transporter | 1.0 | MPMX19_00522 | | putative zinc protease | 0.57 | 1 |
| Azospirillum brasilense Sp245 | 0.69 | AZOBR_RS30625 | | MFS transporter | 0.77 | AZOBR_RS05060 | | zinc protease | 0.32 | 18 |
| Bosea sp. OAE506 | 0.50 | ABIE41_RS22330 | | MFS transporter | 0.44 | ABIE41_RS23245 | | pitrilysin family protein | low | > 77 |
| Xanthobacter sp. DMC5 | 0.49 | GFF2361 | | hypothetical protein | 0.43 | GFF3989 | | putative zinc protease | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.45 | GFF5562 | | Probable MFS transporter precursor | 0.28 | GFF815 | | FIG015547: peptidase, M16 family | low | > 90 |
| Dechlorosoma suillum PS | 0.44 | Dsui_1896 | | arabinose efflux permease family protein | 0.32 | Dsui_1025 | | putative Zn-dependent peptidase | low | > 51 |
| Acidovorax sp. GW101-3H11 | 0.43 | Ac3H11_274 | | Probable MFS transporter precursor | 0.30 | Ac3H11_3875 | | FIG015547: peptidase, M16 family | low | > 79 |
| Cupriavidus basilensis FW507-4G11 | 0.41 | RR42_RS14680 | | MFS transporter | 0.31 | RR42_RS01980 | | peptidase M16 | low | > 128 |
| Variovorax sp. OAS795 | 0.40 | ABID97_RS20110 | | MFS transporter | 0.28 | ABID97_RS23885 | | pitrilysin family protein | low | > 91 |
| Pseudomonas sp. BP01 | 0.40 | JOY50_RS27995 | | MFS transporter | 0.26 | JOY50_RS20820 | | pitrilysin family protein | low | > 84 |
| Variovorax sp. SCN45 | 0.39 | GFF2737 | | Uncharacterized MFS-type transporter | 0.30 | GFF2316 | | FIG015547: peptidase, M16 family | low | > 127 |
| Pseudomonas syringae pv. syringae B728a | 0.39 | Psyr_3671 | | Major facilitator superfamily | 0.27 | Psyr_4752 | | Insulinase-like:Peptidase M16, C-terminal | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.39 | Psyr_3671 | | Major facilitator superfamily | 0.27 | Psyr_4752 | | Insulinase-like:Peptidase M16, C-terminal | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.39 | Pf1N1B4_3717 | | Permeases of the major facilitator superfamily | 0.27 | Pf1N1B4_2322 | | FIG015547: peptidase, M16 family | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.39 | Pf6N2E2_5751 | | Permeases of the major facilitator superfamily | 0.27 | Pf6N2E2_4581 | | FIG015547: peptidase, M16 family | low | > 103 |
| Pseudomonas simiae WCS417 | 0.39 | PS417_20010 | | MFS transporter | 0.26 | PS417_26815 | | peptidase M16 | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.39 | AO356_19190 | | MFS transporter | 0.27 | AO356_13330 | | peptidase M16 | low | > 104 |
| Pseudomonas sp. DMC3 | 0.39 | GFF2558 | | L-lactate transporter | 0.27 | GFF227 | | putative zinc protease | low | > 89 |
| Pseudomonas lactucae CFBP13502 | 0.39 | GEMAOFIL_04199 | | L-lactate transporter | 0.26 | GEMAOFIL_05500 | | putative zinc protease | low | > 96 |
| Pseudomonas fluorescens SBW25 | 0.39 | PFLU_RS21975 | | MFS transporter | 0.27 | PFLU_RS28460 | | insulinase family protein | low | > 109 |
| Pseudomonas fluorescens GW456-L13 | 0.39 | PfGW456L13_4232 | | Permeases of the major facilitator superfamily | 0.27 | PfGW456L13_992 | | FIG015547: peptidase, M16 family | low | > 87 |
| Pseudomonas orientalis W4I3 | 0.39 | QF045_RS22125 | | MFS transporter | 0.26 | QF045_RS01215 | | pitrilysin family protein | low | > 93 |
| Pseudomonas fluorescens SBW25-INTG | 0.39 | PFLU_RS21975 | | MFS transporter | 0.27 | PFLU_RS28460 | | insulinase family protein | low | > 109 |
| Phaeobacter inhibens DSM 17395 | 0.38 | PGA1_c31660 | | transporter, MFS family | 0.39 | PGA1_c32820 | | peptidase, M16 family | low | > 62 |
| Pseudomonas stutzeri RCH2 | 0.38 | Psest_1224 | | Arabinose efflux permease | 0.27 | Psest_0257 | | Predicted Zn-dependent peptidases | low | > 67 |
| Pseudomonas sp. S08-1 | 0.38 | OH686_04930 | | Uncharacterized MFS-type transporter | 0.28 | OH686_14230 | | peptidase, M16 family | low | > 80 |
| Pseudomonas sp. RS175 | 0.37 | PFR28_03198 | | L-lactate transporter | 0.26 | PFR28_04260 | | putative zinc protease | 0.22 | 59 |
| Acinetobacter radioresistens SK82 | 0.37 | MPMX26_02115 | | L-lactate transporter | 0.25 | MPMX26_01630 | | putative zinc protease | — | — |
| Pseudomonas putida KT2440 | 0.37 | PP_1684 | | putative Transporter | 0.25 | PP_5112 | | putative processin peptidase | low | > 96 |
| Pseudomonas segetis P6 | 0.37 | ACVTMO_RS09080 | | MFS transporter | 0.28 | ACVTMO_RS21915 | | M16 family metallopeptidase | low | > 75 |
| Pseudomonas fluorescens FW300-N2E3 | 0.37 | AO353_02585 | | MFS transporter | 0.28 | AO353_08255 | | peptidase M16 | low | > 101 |
| Pseudomonas sp. SVBP6 | 0.37 | COO64_RS07195 | | MFS transporter | 0.27 | COO64_RS12905 | | pitrilysin family protein | low | > 93 |
| Ralstonia sp. UNC404CL21Col | 0.37 | ABZR87_RS12135 | | MFS transporter | 0.30 | ABZR87_RS06950 | | pitrilysin family protein | low | > 80 |
| Herbaspirillum seropedicae SmR1 | 0.36 | HSERO_RS06405 | | MFS transporter | 0.30 | HSERO_RS20710 | | peptidase M16 | low | > 78 |
| Magnetospirillum magneticum AMB-1 | 0.36 | AMB_RS03845 | | MFS transporter | 0.50 | AMB_RS04270 | | insulinase family protein | low | > 64 |
| Pseudomonas aeruginosa PUPa3 | 0.36 | DQ20_RS46795 | | MFS transporter | 0.25 | DQ20_RS37460 | | pitrilysin family protein | low | > 101 |
| Pseudomonas aeruginosa MRSN321 | 0.36 | DY961_RS05980 | | MFS transporter | 0.25 | DY961_RS21835 | | pitrilysin family protein | low | > 100 |
| Pseudomonas aeruginosa PA14 | 0.35 | IKLFDK_06100 | | MFS transporter | 0.25 | IKLFDK_23565 | | peptidase M16 | low | > 98 |
| Rhodopseudomonas palustris CGA009 | 0.34 | TX73_008705 | | MFS transporter | 0.41 | TX73_022675 | | pitrilysin family protein | low | > 86 |
| Dinoroseobacter shibae DFL-12 | 0.32 | Dshi_0111 | | major facilitator superfamily MFS_1 (RefSeq) | 0.37 | Dshi_0361 | | peptidase M16 domain protein (RefSeq) | low | > 64 |
Not shown: 10 genomes with orthologs for MPMX19_01646 only; 26 genomes with orthologs for MPMX19_00522 only