Conservation of cofitness between HSERO_RS05365 and HSERO_RS07655 in Herbaspirillum seropedicae SmR1

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS05365 transporter 1.0 HSERO_RS07655 nodulation protein 0.24 18
Sinorhizobium meliloti 1021 0.50 SM_b20625 hypothetical protein 0.21 SMc01457 transport transmembrane protein low > 103
Ralstonia sp. UNC404CL21Col 0.37 ABZR87_RS12380 MFS transporter 0.66 ABZR87_RS19020 multidrug efflux RND transporter permease subunit low > 80
Enterobacter sp. TBS_079 0.36 MPMX20_02689 Purine ribonucleoside efflux pump NepI 0.58 MPMX20_03062 Multidrug resistance protein MdtC low > 85
Pectobacterium carotovorum WPP14 0.36 HER17_RS16845 MFS transporter 0.57 HER17_RS06315 multidrug efflux RND transporter permease subunit MdtC low > 75
Rahnella sp. WP5 0.35 EX31_RS02065 MFS transporter 0.49 EX31_RS13375 MMPL family transporter low > 89
Enterobacter asburiae PDN3 0.34 EX28DRAFT_0776 Arabinose efflux permease 0.58 EX28DRAFT_0482 Cation/multidrug efflux pump low > 76
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_29615 transporter 0.48 AO356_25880 acriflavine resistance protein B low > 104
Pantoea sp. MT58 0.34 IAI47_17680 MFS transporter 0.56 IAI47_06865 multidrug efflux RND transporter permease subunit MdtC low > 76
Variovorax sp. SCN45 0.33 GFF3833 FIG01056426: hypothetical protein 0.55 GFF6658 Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtC (RND type) low > 127
Pseudomonas simiae WCS417 0.33 PS417_11060 transporter 0.50 PS417_12750 acriflavine resistance protein B low > 88
Klebsiella michiganensis M5al 0.33 BWI76_RS27765 MFS transporter 0.56 BWI76_RS19260 multidrug transporter subunit MdtC low > 92
Pseudomonas fluorescens SBW25 0.32 PFLU_RS11690 MFS transporter 0.50 PFLU_RS13435 MMPL family transporter low > 109
Pseudomonas fluorescens SBW25-INTG 0.32 PFLU_RS11690 MFS transporter 0.50 PFLU_RS13435 MMPL family transporter low > 109
Agrobacterium fabrum C58 0.32 Atu3804 permease 0.38 Atu3274 AcrB/AcrD/AcrF family protein low > 89
Paraburkholderia graminis OAS925 0.30 ABIE53_005584 putative MFS family arabinose efflux permease 0.46 ABIE53_001782 multidrug efflux pump low > 113
Escherichia coli ECRC62 0.30 BNILDI_04155 nepI purine ribonucleoside efflux pump NepI 0.57 BNILDI_14450 mdtC multidrug efflux RND transporter permease subunit MdtC low > 75
Escherichia coli ECOR27 0.30 NOLOHH_07370 nepI purine ribonucleoside efflux pump NepI 0.57 NOLOHH_15535 mdtC multidrug efflux RND transporter permease subunit MdtC low > 75
Escherichia coli ECOR38 0.30 HEPCGN_13950 nepI purine ribonucleoside efflux pump NepI 0.57 HEPCGN_02880 mdtC multidrug efflux RND transporter permease subunit MdtC low > 87
Escherichia coli BW25113 0.30 b3662 nepI predicted transporter (RefSeq) 0.57 b2076 mdtC multidrug efflux system, subunit C (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.30 OHPLBJKB_00038 Purine ribonucleoside efflux pump NepI 0.57 OHPLBJKB_01628 Multidrug resistance protein MdtC low > 73
Escherichia fergusonii Becca 0.30 EFB2_00038 Purine ribonucleoside efflux pump NepI 0.56 EFB2_01779 Multidrug resistance protein MdtC low > 86
Escherichia coli ECRC100 0.30 OKFHMN_15230 nepI purine ribonucleoside efflux pump NepI 0.57 OKFHMN_24190 mdtC multidrug efflux RND transporter permease subunit MdtC low > 80
Escherichia coli ECRC99 0.30 KEDOAH_12915 nepI purine ribonucleoside efflux pump NepI 0.57 KEDOAH_03960 mdtC multidrug efflux RND transporter permease subunit MdtC — —
Escherichia coli Nissle 1917 0.30 ECOLIN_RS21125 purine ribonucleoside efflux pump NepI 0.56 ECOLIN_RS12205 multidrug efflux RND transporter permease subunit MdtC — —
Escherichia coli ECRC102 0.30 NIAGMN_12990 nepI purine ribonucleoside efflux pump NepI 0.57 NIAGMN_22135 mdtC multidrug efflux RND transporter permease subunit MdtC — —
Escherichia coli ECRC98 0.30 JDDGAC_18855 nepI purine ribonucleoside efflux pump NepI 0.57 JDDGAC_28300 mdtC multidrug efflux RND transporter permease subunit MdtC low > 86
Escherichia coli ECRC101 0.30 MCAODC_05740 nepI purine ribonucleoside efflux pump NepI 0.57 MCAODC_20750 mdtC multidrug efflux RND transporter permease subunit MdtC low > 87
Serratia liquefaciens MT49 0.29 IAI46_07000 MFS transporter 0.59 IAI46_18980 multidrug efflux RND transporter permease subunit MdtC low > 86
Paraburkholderia sabiae LMG 24235 0.29 QEN71_RS13705 MFS transporter 0.58 QEN71_RS23310 efflux RND transporter permease subunit low > 153
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF318 Putative transport protein 0.56 GFF3853 Multidrug transporter MdtC low > 78
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_2246 Arabinose efflux permease 0.48 Pf6N2E2_1271 Acriflavin resistance plasma membrane protein low > 103
Pseudomonas sp. RS175 0.29 PFR28_01200 Purine ribonucleoside efflux pump NepI 0.48 PFR28_02193 Multidrug resistance protein MdtC low > 88
Burkholderia phytofirmans PsJN 0.29 BPHYT_RS28285 MFS transporter 0.45 BPHYT_RS23545 nodulation protein low > 109
Pseudomonas putida KT2440 0.28 PP_2647 Major facilitator family transporter 0.50 PP_3583 multidrug efflux transport system - membrane subunit low > 96
Dickeya dianthicola 67-19 0.28 HGI48_RS08210 MFS transporter 0.55 HGI48_RS15350 multidrug efflux RND transporter permease subunit MdtC low > 71
Cupriavidus basilensis FW507-4G11 0.27 RR42_RS30495 transcriptional regulator 0.64 RR42_RS03305 acriflavin resistance protein low > 128
Ralstonia solanacearum PSI07 0.27 RPSI07_RS04185 MFS transporter 0.66 RPSI07_RS05520 nodulation protein low > 81
Pseudomonas syringae pv. syringae B728a 0.27 Psyr_3800 Major facilitator superfamily 0.51 Psyr_2484 Acriflavin resistance protein low > 86
Ralstonia solanacearum GMI1000 0.27 RS_RS01025 MFS transporter 0.66 RS_RS22920 nodulation protein low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.27 Psyr_3800 Major facilitator superfamily 0.51 Psyr_2484 Acriflavin resistance protein low > 86
Ralstonia solanacearum IBSBF1503 0.26 RALBFv3_RS20735 MFS transporter 0.65 RALBFv3_RS18115 nodulation protein low > 76
Azospirillum brasilense Sp245 0.14 AZOBR_RS21030 MFS transporter 0.42 AZOBR_RS14670 multidrug transporter low > 97

Not shown: 9 genomes with orthologs for HSERO_RS05365 only; 18 genomes with orthologs for HSERO_RS07655 only