Conservation of cofitness between HSERO_RS16725 and HSERO_RS07160 in Herbaspirillum seropedicae SmR1

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS16725 ABC transporter permease 1.0 HSERO_RS07160 phospho-2-dehydro-3-deoxyheptonate aldolase 0.23 16
Cupriavidus basilensis FW507-4G11 0.84 RR42_RS18600 ABC transporter permease 0.79 RR42_RS05860 phospho-2-dehydro-3-deoxyheptonate aldolase low > 128
Rhodopseudomonas palustris CGA009 0.67 TX73_017955 sugar ABC transporter permease 0.65 TX73_000140 3-deoxy-7-phosphoheptulonate synthase low > 86
Rahnella sp. WP5 0.27 EX31_RS07050 sugar ABC transporter permease 0.66 EX31_RS23545 3-deoxy-7-phosphoheptulonate synthase AroG low > 89
Synechococcus elongatus PCC 7942 0.27 Synpcc7942_0949 permease protein of sugar ABC transporter 0.50 Synpcc7942_2501 aroF phospho-2-dehydro-3-heoxyheptonate aldolase
Serratia liquefaciens MT49 0.27 IAI46_11765 sugar ABC transporter permease 0.66 IAI46_06405 3-deoxy-7-phosphoheptulonate synthase AroG low > 86
Castellaniella sp019104865 MT123 0.26 ABCV34_RS07880 sugar ABC transporter permease 0.70 ABCV34_RS06825 3-deoxy-7-phosphoheptulonate synthase AroG
Pantoea sp. MT58 0.26 IAI47_20095 sugar ABC transporter permease 0.66 IAI47_13605 3-deoxy-7-phosphoheptulonate synthase AroG low > 76
Paraburkholderia bryophila 376MFSha3.1 0.25 H281DRAFT_03746 carbohydrate ABC transporter membrane protein 1, CUT1 family 0.82 H281DRAFT_04687 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase low > 103
Paraburkholderia sabiae LMG 24235 0.25 QEN71_RS15900 sugar ABC transporter permease 0.82 QEN71_RS26560 3-deoxy-7-phosphoheptulonate synthase AroG low > 153
Burkholderia phytofirmans PsJN 0.24 BPHYT_RS35665 ABC transporter permease 0.83 BPHYT_RS03535 phospho-2-dehydro-3-deoxyheptonate aldolase 0.21 41
Erwinia tracheiphila SCR3 0.24 LU632_RS00815 sugar ABC transporter permease 0.64 LU632_RS15925 aroG 3-deoxy-7-phosphoheptulonate synthase AroG low > 74
Paraburkholderia graminis OAS925 0.24 ABIE53_004503 multiple sugar transport system permease protein 0.83 ABIE53_000850 3-deoxy-7-phosphoheptulonate synthase low > 113
Hydrogenophaga sp. GW460-11-11-14-LB1 0.23 GFF4373 Maltose/maltodextrin ABC transporter, permease protein MalF 0.64 GFF581 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) low > 90
Pseudomonas syringae pv. syringae B728a 0.22 Psyr_0761 carbohydrate ABC transporter membrane protein 1, CUT1 family 0.49 Psyr_2073 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.22 Psyr_0761 carbohydrate ABC transporter membrane protein 1, CUT1 family 0.49 Psyr_2073 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase low > 86
Variovorax sp. OAS795 0.21 ABID97_RS29290 sugar ABC transporter permease 0.65 ABID97_RS06345 3-deoxy-7-phosphoheptulonate synthase low > 91
Pseudomonas fluorescens FW300-N2E2 0.21 Pf6N2E2_1647 Maltose/maltodextrin ABC transporter, permease protein MalF 0.48 Pf6N2E2_2470 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) low > 103
Enterobacter asburiae PDN3 0.20 EX28DRAFT_0982 ABC-type sugar transport systems, permease components 0.65 EX28DRAFT_2241 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) low > 76
Bifidobacterium breve UCC2003 0.20 BBR_RS20185 sugar ABC transporter permease 0.47 BBR_RS19195 3-deoxy-7-phosphoheptulonate synthase low > 34
Pseudomonas fluorescens FW300-N2E3 0.19 AO353_25120 ABC transporter permease 0.48 AO353_19030 phospho-2-dehydro-3-deoxyheptonate aldolase low > 101
Pectobacterium carotovorum WPP14 0.19 HER17_RS03520 sugar ABC transporter permease 0.66 HER17_RS14805 3-deoxy-7-phosphoheptulonate synthase AroG low > 75
Enterobacter sp. TBS_079 0.19 MPMX20_02466 Inner membrane ABC transporter permease protein YcjO 0.64 MPMX20_01381 Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive low > 85
Escherichia coli Nissle 1917 0.19 ECOLIN_RS07885 sugar ABC transporter permease 0.66 ECOLIN_RS04015 3-deoxy-7-phosphoheptulonate synthase AroG
Escherichia coli BL21 0.19 ECD_01288 putative sugar ABC transporter permease 0.67 ECD_00707 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible low > 61
Escherichia fergusonii Becca 0.19 EFB2_02616 Inner membrane ABC transporter permease protein YcjO 0.66 EFB2_03352 Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.19 OHPLBJKB_02371 Inner membrane ABC transporter permease protein YcjO 0.67 OHPLBJKB_02959 Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive low > 73
Pseudomonas fluorescens FW300-N2C3 0.18 AO356_28575 ABC transporter permease 0.48 AO356_03200 phospho-2-dehydro-3-deoxyheptonate aldolase low > 104
Escherichia coli ECOR27 0.18 NOLOHH_20060 ugpA sugar ABC transporter permease 0.67 NOLOHH_23170 aroG 3-deoxy-7-phosphoheptulonate synthase AroG low > 75
Escherichia coli ECRC98 0.18 JDDGAC_04910 ugpA sugar ABC transporter permease 0.67 JDDGAC_10395 aroG 3-deoxy-7-phosphoheptulonate synthase AroG low > 86
Escherichia coli ECRC102 0.18 NIAGMN_26535 ugpA sugar ABC transporter permease 0.67 NIAGMN_04790 aroG 3-deoxy-7-phosphoheptulonate synthase AroG
Escherichia coli ECRC100 0.18 OKFHMN_02365 ugpA sugar ABC transporter permease 0.67 OKFHMN_06740 aroG 3-deoxy-7-phosphoheptulonate synthase AroG low > 80
Escherichia coli ECRC99 0.18 KEDOAH_26410 ugpA sugar ABC transporter permease 0.67 KEDOAH_21225 aroG 3-deoxy-7-phosphoheptulonate synthase AroG
Escherichia coli ECRC101 0.18 MCAODC_15905 ugpA sugar ABC transporter permease 0.67 MCAODC_25960 aroG 3-deoxy-7-phosphoheptulonate synthase AroG low > 87
Escherichia coli BW25113 0.18 b1311 ycjO predicted sugar transporter subunit: membrane component of ABC superfamily (NCBI) 0.67 b0754 aroG 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible (NCBI) low > 76
Escherichia coli ECOR38 0.18 HEPCGN_25825 ugpA sugar ABC transporter permease 0.66 HEPCGN_01535 aroG 3-deoxy-7-phosphoheptulonate synthase AroG low > 87
Pseudomonas fluorescens FW300-N1B4 0.17 Pf1N1B4_5113 sucrose ABC transporter, permease component 1 (from data) 0.47 Pf1N1B4_289 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) low > 87

Not shown: 6 genomes with orthologs for HSERO_RS16725 only; 38 genomes with orthologs for HSERO_RS07160 only