Conservation of cofitness between HSERO_RS08715 and HSERO_RS05420 in Herbaspirillum seropedicae SmR1

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS08715 2-dehydro-3-deoxygluconokinase 1.0 HSERO_RS05420 4-aminobutyrate aminotransferase 0.30 17
Paraburkholderia bryophila 376MFSha3.1 0.60 H281DRAFT_00856 2-keto-3-deoxygluconate kinase 0.74 H281DRAFT_03179 4-aminobutyrate aminotransferase apoenzyme low > 103
Burkholderia phytofirmans PsJN 0.60 BPHYT_RS09175 2-dehydro-3-deoxygluconokinase 0.74 BPHYT_RS22435 4-aminobutyrate aminotransferase low > 109
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS28860 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) (from data) 0.77 RR42_RS26240 4-aminobutyrate aminotransferase low > 128
Ralstonia solanacearum PSI07 0.57 RPSI07_RS05445 sugar kinase 0.70 RPSI07_RS23805 4-aminobutyrate--2-oxoglutarate transaminase low > 81
Ralstonia sp. UNC404CL21Col 0.57 ABZR87_RS19120 sugar kinase 0.72 ABZR87_RS05190 4-aminobutyrate--2-oxoglutarate transaminase low > 80
Ralstonia solanacearum GMI1000 0.56 RS_RS22845 sugar kinase 0.70 RS_RS00145 4-aminobutyrate--2-oxoglutarate transaminase low > 80
Ralstonia solanacearum IBSBF1503 0.55 RALBFv3_RS18190 sugar kinase 0.70 RALBFv3_RS09545 4-aminobutyrate--2-oxoglutarate transaminase low > 76
Ralstonia solanacearum UW163 0.55 UW163_RS20940 sugar kinase 0.70 UW163_RS04035 4-aminobutyrate--2-oxoglutarate transaminase — —
Paraburkholderia sabiae LMG 24235 0.55 QEN71_RS22180 sugar kinase 0.77 QEN71_RS19980 4-aminobutyrate--2-oxoglutarate transaminase low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF178 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) 0.64 GFF2029 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 90
Acidovorax sp. GW101-3H11 0.39 Ac3H11_700 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) 0.59 Ac3H11_4179 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 79
Azospirillum sp. SherDot2 0.22 MPMX19_05795 2-dehydro-3-deoxygluconokinase 0.61 MPMX19_04919 5-aminovalerate aminotransferase DavT low > 112
Serratia liquefaciens MT49 0.22 IAI46_24320 sugar kinase 0.71 IAI46_22165 4-aminobutyrate--2-oxoglutarate transaminase low > 86
Azospirillum brasilense Sp245 0.21 AZOBR_RS29860 ketodeoxygluconokinase 0.64 AZOBR_RS19630 4-aminobutyrate aminotransferase low > 97
Klebsiella michiganensis M5al 0.21 BWI76_RS26750 PfkB domain-containing protein 0.70 BWI76_RS26375 aspartate aminotransferase family protein low > 92
Enterobacter sp. TBS_079 0.21 MPMX20_04411 2-dehydro-3-deoxygluconokinase 0.68 MPMX20_04337 4-aminobutyrate aminotransferase PuuE low > 85
Enterobacter asburiae PDN3 0.21 EX28DRAFT_4051 Sugar kinases, ribokinase family 0.69 EX28DRAFT_4294 4-aminobutyrate aminotransferase, prokaryotic type low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.20 GFF497 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) 0.54 GFF1567 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 78
Escherichia coli Nissle 1917 0.20 ECOLIN_RS18675 sugar kinase 0.55 ECOLIN_RS14845 4-aminobutyrate--2-oxoglutarate transaminase low > 55
Escherichia coli BL21 0.20 ECD_03374 2-dehydro-3-deoxygluconokinase 0.68 ECD_01279 4-aminobutyrate aminotransferase, PLP-dependent low > 61
Escherichia coli ECRC62 0.20 BNILDI_03385 kdgK 2-dehydro-3-deoxygluconokinase 0.68 BNILDI_18255 puuE 4-aminobutyrate transaminase low > 75
Escherichia coli ECOR27 0.20 NOLOHH_08170 kdgK 2-dehydro-3-deoxygluconokinase 0.68 NOLOHH_20105 puuE 4-aminobutyrate transaminase low > 75
Escherichia coli ECRC99 0.20 KEDOAH_11945 kdgK 2-dehydro-3-deoxygluconokinase 0.68 KEDOAH_26355 puuE 4-aminobutyrate transaminase — —
Escherichia coli ECRC101 0.20 MCAODC_06720 kdgK 2-dehydro-3-deoxygluconokinase 0.68 MCAODC_15850 puuE 4-aminobutyrate transaminase low > 87
Escherichia coli ECRC102 0.20 NIAGMN_13970 kdgK 2-dehydro-3-deoxygluconokinase 0.68 NIAGMN_26590 puuE 4-aminobutyrate transaminase — —
Escherichia coli ECRC98 0.20 JDDGAC_19835 kdgK 2-dehydro-3-deoxygluconokinase 0.68 JDDGAC_04965 puuE 4-aminobutyrate transaminase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.20 OHPLBJKB_00176 2-dehydro-3-deoxygluconokinase 0.68 OHPLBJKB_02380 4-aminobutyrate aminotransferase PuuE low > 73
Escherichia coli ECRC100 0.20 OKFHMN_16205 kdgK 2-dehydro-3-deoxygluconokinase 0.68 OKFHMN_02420 puuE 4-aminobutyrate transaminase low > 80
Dickeya dianthicola ME23 0.20 DZA65_RS21825 sugar kinase 0.69 DZA65_RS12405 4-aminobutyrate--2-oxoglutarate transaminase low > 75
Escherichia coli BW25113 0.20 b3526 kdgK ketodeoxygluconokinase (VIMSS) 0.68 b1302 puuE GABA aminotransferase, PLP-dependent (NCBI) low > 76
Dickeya dianthicola 67-19 0.20 HGI48_RS20810 2-dehydro-3-deoxygluconokinase 0.68 HGI48_RS11860 4-aminobutyrate--2-oxoglutarate transaminase low > 71
Pectobacterium carotovorum WPP14 0.19 HER17_RS00410 sugar kinase 0.68 HER17_RS09880 4-aminobutyrate--2-oxoglutarate transaminase low > 75
Dickeya dadantii 3937 0.19 DDA3937_RS00580 2-dehydro-3-deoxygluconokinase 0.68 DDA3937_RS11830 4-aminobutyrate--2-oxoglutarate transaminase low > 74
Rahnella sp. WP5 0.19 EX31_RS05435 sugar kinase 0.66 EX31_RS00095 4-aminobutyrate--2-oxoglutarate transaminase low > 89
Sinorhizobium meliloti 1021 0.18 SMc01531 2-dehydro-3-deoxygluconokinase 0.62 SM_b21186 4-aminobutyrate aminotransferase low > 103
Pseudomonas syringae pv. syringae B728a 0.18 Psyr_2510 2-keto-3-deoxygluconate kinase 0.53 Psyr_0090 4-aminobutyrate aminotransferase apoenzyme low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.18 Psyr_2510 2-keto-3-deoxygluconate kinase 0.53 Psyr_0090 4-aminobutyrate aminotransferase apoenzyme low > 86
Rhizobium sp. OAE497 0.18 ABIE40_RS13595 sugar kinase 0.64 ABIE40_RS00145 4-aminobutyrate--2-oxoglutarate transaminase low > 107
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS16210 sugar kinase 0.25 ABZR88_RS18040 aspartate aminotransferase family protein low > 71
Lysobacter sp. OAE881 0.14 ABIE51_RS02335 carbohydrate kinase 0.24 ABIE51_RS02780 aspartate aminotransferase family protein low > 62
Bacteroides thetaiotaomicron VPI-5482 0.14 BT0488 2-dehydro-3-deoxygluconokinase (NCBI ptt file) 0.23 BT3758 N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) — —
Phocaeicola dorei CL03T12C01 0.13 ABI39_RS15375 sugar kinase 0.23 ABI39_RS11290 ornithine--oxo-acid transaminase low > 72
Phocaeicola vulgatus CL09T03C04 0.13 HMPREF1058_RS01690 sugar kinase 0.23 HMPREF1058_RS15260 ornithine--oxo-acid transaminase low > 67

Not shown: 8 genomes with orthologs for HSERO_RS08715 only; 34 genomes with orthologs for HSERO_RS05420 only