Conservation of cofitness between HSERO_RS16870 and HSERO_RS05365 in Herbaspirillum seropedicae SmR1

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS16870 D-alanyl-D-alanine carboxypeptidase 1.0 HSERO_RS05365 transporter 0.25 16
Ralstonia solanacearum PSI07 0.37 RPSI07_RS21110 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 0.27 RPSI07_RS04185 MFS transporter low > 81
Ralstonia solanacearum GMI1000 0.37 RS_RS02925 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 0.27 RS_RS01025 MFS transporter low > 80
Variovorax sp. SCN45 0.37 GFF5516 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.33 GFF3833 FIG01056426: hypothetical protein low > 127
Ralstonia solanacearum IBSBF1503 0.37 RALBFv3_RS12220 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 0.26 RALBFv3_RS20735 MFS transporter low > 76
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS08110 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 0.37 ABZR87_RS12380 MFS transporter low > 80
Variovorax sp. OAS795 0.36 ABID97_RS01685 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 0.34 ABID97_RS08210 MFS transporter low > 91
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_04181 D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) 0.29 H281DRAFT_01232 Predicted arabinose efflux permease, MFS family low > 103
Cupriavidus basilensis FW507-4G11 0.36 RR42_RS03245 D-alanyl-D-alanine carboxypeptidase 0.27 RR42_RS30495 transcriptional regulator low > 128
Paraburkholderia graminis OAS925 0.36 ABIE53_003419 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) 0.30 ABIE53_005584 putative MFS family arabinose efflux permease low > 113
Pseudomonas putida KT2440 0.35 PP_2098 D-alanyl-D-alanine carboxypeptidase 0.28 PP_2647 Major facilitator family transporter low > 96
Pseudomonas fluorescens SBW25 0.35 PFLU_RS22535 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 0.32 PFLU_RS11690 MFS transporter low > 109
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS22535 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 0.32 PFLU_RS11690 MFS transporter low > 109
Pseudomonas simiae WCS417 0.35 PS417_20920 D-alanyl-D-alanine carboxypeptidase 0.33 PS417_11060 transporter low > 88
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_02595 D-alanyl-D-alanine carboxypeptidase 0.34 AO356_29615 transporter low > 104
Pseudomonas sp. RS175 0.34 PFR28_01057 D-alanyl-D-alanine carboxypeptidase DacC 0.29 PFR28_01200 Purine ribonucleoside efflux pump NepI low > 88
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_2111 Peptidase S13, D-Ala-D-Ala carboxypeptidase C 0.27 Psyr_3800 Major facilitator superfamily low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_2111 Peptidase S13, D-Ala-D-Ala carboxypeptidase C 0.27 Psyr_3800 Major facilitator superfamily low > 86
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_2344 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.29 Pf6N2E2_2246 Arabinose efflux permease low > 103
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_3846 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.26 Pf1N1B4_4993 Arabinose efflux permease low > 87
Pectobacterium carotovorum WPP14 0.15 HER17_RS18335 serine-type D-Ala-D-Ala carboxypeptidase 0.36 HER17_RS16845 MFS transporter low > 75
Dickeya dianthicola 67-19 0.14 HGI48_RS03180 serine-type D-Ala-D-Ala carboxypeptidase 0.28 HGI48_RS08210 MFS transporter low > 71
Enterobacter asburiae PDN3 0.14 EX28DRAFT_3234 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family 0.34 EX28DRAFT_0776 Arabinose efflux permease low > 76
Enterobacter sp. TBS_079 0.14 MPMX20_04086 D-alanyl-D-alanine carboxypeptidase DacB 0.36 MPMX20_02689 Purine ribonucleoside efflux pump NepI low > 85
Rahnella sp. WP5 0.14 EX31_RS08600 serine-type D-Ala-D-Ala carboxypeptidase 0.35 EX31_RS02065 MFS transporter low > 89
Klebsiella michiganensis M5al 0.14 BWI76_RS25165 serine-type D-Ala-D-Ala carboxypeptidase 0.33 BWI76_RS27765 MFS transporter low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.13 GFF2924 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.29 GFF318 Putative transport protein low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.13 OHPLBJKB_00518 D-alanyl-D-alanine carboxypeptidase DacB 0.30 OHPLBJKB_00038 Purine ribonucleoside efflux pump NepI low > 73
Escherichia coli ECOR27 0.13 NOLOHH_09840 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.30 NOLOHH_07370 nepI purine ribonucleoside efflux pump NepI low > 75
Escherichia coli BW25113 0.13 b3182 dacB D-alanyl-D-alanine carboxypeptidase (NCBI) 0.30 b3662 nepI predicted transporter (RefSeq) low > 76
Escherichia coli ECOR38 0.13 HEPCGN_16915 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.30 HEPCGN_13950 nepI purine ribonucleoside efflux pump NepI low > 87
Escherichia coli ECRC62 0.13 BNILDI_01695 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.30 BNILDI_04155 nepI purine ribonucleoside efflux pump NepI low > 75
Escherichia coli Nissle 1917 0.13 ECOLIN_RS18325 serine-type D-Ala-D-Ala carboxypeptidase 0.30 ECOLIN_RS21125 purine ribonucleoside efflux pump NepI low > 55
Escherichia fergusonii Becca 0.13 EFB2_00641 D-alanyl-D-alanine carboxypeptidase DacB 0.30 EFB2_00038 Purine ribonucleoside efflux pump NepI low > 86
Escherichia coli ECRC101 0.13 MCAODC_08560 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.30 MCAODC_05740 nepI purine ribonucleoside efflux pump NepI low > 87
Escherichia coli ECRC98 0.13 JDDGAC_21665 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.30 JDDGAC_18855 nepI purine ribonucleoside efflux pump NepI low > 86
Escherichia coli ECRC99 0.13 KEDOAH_10110 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.30 KEDOAH_12915 nepI purine ribonucleoside efflux pump NepI — —
Escherichia coli ECRC100 0.13 OKFHMN_18040 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.30 OKFHMN_15230 nepI purine ribonucleoside efflux pump NepI low > 80
Escherichia coli ECRC102 0.13 NIAGMN_15800 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.30 NIAGMN_12990 nepI purine ribonucleoside efflux pump NepI — —
Serratia liquefaciens MT49 0.13 IAI46_01875 serine-type D-Ala-D-Ala carboxypeptidase 0.29 IAI46_07000 MFS transporter low > 86
Azospirillum brasilense Sp245 0.10 AZOBR_RS18340 D-alanyl-D-alanine carboxypeptidase 0.14 AZOBR_RS21030 MFS transporter low > 97
Sphingomonas koreensis DSMZ 15582 0.08 Ga0059261_1299 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family 0.17 Ga0059261_0142 Arabinose efflux permease low > 68

Not shown: 28 genomes with orthologs for HSERO_RS16870 only; 10 genomes with orthologs for HSERO_RS05365 only