Conservation of cofitness between HSERO_RS10860 and HSERO_RS04220 in Herbaspirillum seropedicae SmR1

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS10860 RNA pseudouridylate synthase 1.0 HSERO_RS04220 epoxyqueuosine reductase 0.31 9
Variovorax sp. OAS795 0.65 ABID97_RS00980 pseudouridine synthase 0.59 ABID97_RS20285 tRNA epoxyqueuosine(34) reductase QueG low > 91
Variovorax sp. SCN45 0.64 GFF3530 Pseudouridine synthase 0.55 GFF4805 Epoxyqueuosine reductase (EC 1.17.99.6) QueG low > 127
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS12155 RNA-binding protein S4 0.63 BPHYT_RS15960 iron-sulfur cluster binding protein low > 109
Castellaniella sp019104865 MT123 0.63 ABCV34_RS03070 pseudouridine synthase 0.58 ABCV34_RS13905 tRNA epoxyqueuosine(34) reductase QueG low > 48
Paraburkholderia bryophila 376MFSha3.1 0.61 H281DRAFT_00606 23S rRNA pseudouridine2604 synthase 0.62 H281DRAFT_04128 epoxyqueuosine reductase low > 103
Brevundimonas sp. GW460-12-10-14-LB2 0.43 A4249_RS07850 pseudouridine synthase 0.32 A4249_RS11375 tRNA epoxyqueuosine(34) reductase QueG 0.62 2
Lysobacter sp. OAE881 0.39 ABIE51_RS13020 rRNA pseudouridine synthase 0.53 ABIE51_RS08045 tRNA epoxyqueuosine(34) reductase QueG low > 62
Rhodanobacter denitrificans MT42 0.38 LRK55_RS15640 rRNA pseudouridine synthase 0.55 LRK55_RS14845 tRNA epoxyqueuosine(34) reductase QueG low > 63
Rhodanobacter denitrificans FW104-10B01 0.38 LRK54_RS15885 rRNA pseudouridine synthase 0.55 LRK54_RS15130 tRNA epoxyqueuosine(34) reductase QueG low > 59
Rhodanobacter sp. FW510-T8 0.38 OKGIIK_04535 rsuA RNA-binding protein 0.55 OKGIIK_03900 queG tRNA epoxyqueuosine(34) reductase QueG low > 52
Pseudomonas sp. RS175 0.36 PFR28_00484 Dual-specificity RNA pseudouridine synthase RluF 0.57 PFR28_05115 Epoxyqueuosine reductase low > 88
Pseudomonas fluorescens GW456-L13 0.36 PfGW456L13_4655 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.57 PfGW456L13_160 Epoxyqueuosine (oQ) reductase QueG low > 87
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_05610 RNA-binding protein 0.57 AO356_08685 epoxyqueuosine reductase 0.27 24
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.1469.1 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.52 Xcc-8004.2252.1 Epoxyqueuosine (oQ) reductase QueG low > 74
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_3158 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.57 Pf1N1B4_1418 Epoxyqueuosine (oQ) reductase QueG low > 87
Caulobacter crescentus NA1000 0.35 CCNA_00898 ribosomal large subunit pseudouridine synthase F 0.32 CCNA_03753 iron-sulfur cluster-binding protein low > 66
Caulobacter crescentus NA1000 Δfur 0.35 CCNA_00898 ribosomal large subunit pseudouridine synthase F 0.32 CCNA_03753 iron-sulfur cluster-binding protein low > 67
Pseudomonas simiae WCS417 0.35 PS417_05870 RNA-binding protein S4 0.57 PS417_02460 epoxyqueuosine reductase low > 88
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS05940 RNA-binding protein S4 0.57 PFLU_RS02540 tRNA epoxyqueuosine(34) reductase QueG low > 109
Pseudomonas fluorescens SBW25 0.35 PFLU_RS05940 RNA-binding protein S4 0.57 PFLU_RS02540 tRNA epoxyqueuosine(34) reductase QueG low > 109
Pseudomonas syringae pv. syringae B728a 0.35 Psyr_1390 RNA-binding S4 0.59 Psyr_0566 4Fe-4S cluster binding protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.35 Psyr_1390 RNA-binding S4 0.59 Psyr_0566 4Fe-4S cluster binding protein low > 86
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_16865 RNA-binding protein 0.57 AO353_13115 epoxyqueuosine reductase low > 101
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS18320 rRNA pseudouridine synthase 0.58 ABZR86_RS00835 tRNA epoxyqueuosine(34) reductase QueG low > 74
Pseudomonas sp. S08-1 0.32 OH686_05400 Pseudouridine synthase 0.59 OH686_09500 epoxyqueuosine reductase low > 80
Pseudomonas putida KT2440 0.30 PP_1191 S4 domain protein 0.55 PP_4900 epoxyqueuosine reductase 0.24 31
Pseudomonas stutzeri RCH2 0.29 Psest_2917 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 0.55 Psest_0677 iron-sulfur cluster binding protein, putative low > 67
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_2980 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.56 Pf6N2E2_3620 Epoxyqueuosine (oQ) reductase QueG low > 103
Alteromonas macleodii MIT1002 0.25 MIT1002_01776 Ribosomal large subunit pseudouridine synthase F 0.53 MIT1002_03794 Epoxyqueuosine reductase low > 70
Echinicola vietnamensis KMM 6221, DSM 17526 0.24 Echvi_1010 pseudouridine synthase 0.30 Echvi_0824 iron-sulfur cluster binding protein, putative low > 79
Shewanella loihica PV-4 0.19 Shew_3180 pseudouridine synthase (RefSeq) 0.53 Shew_2979 putative iron-sulfur cluster binding protein (RefSeq) low > 60

Not shown: 0 genomes with orthologs for HSERO_RS10860 only; 57 genomes with orthologs for HSERO_RS04220 only