Conservation of cofitness between HSERO_RS17110 and HSERO_RS01870 in Herbaspirillum seropedicae SmR1

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS17110 ribonuclease H 1.0 HSERO_RS01870 ABC transporter permease 0.44 6
Acidovorax sp. GW101-3H11 0.72 Ac3H11_480 Ribonuclease HI (EC 3.1.26.4) 0.30 Ac3H11_4016 CcsA-related protein — —
Pseudomonas fluorescens GW456-L13 0.72 PfGW456L13_3338 Ribonuclease HI (EC 3.1.26.4) 0.24 PfGW456L13_1714 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) — —
Pseudomonas putida KT2440 0.72 PP_4142 ribonuclease H 0.22 PP_1460 putative Membrane protein — —
Pseudomonas fluorescens FW300-N2C3 0.72 AO356_24490 ribonuclease H 0.21 AO356_06415 cytochrome C assembly protein — —
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_589 Ribonuclease HI (EC 3.1.26.4) 0.20 Pf6N2E2_3151 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) — —
Pseudomonas sp. RS175 0.72 PFR28_01554 Ribonuclease HI 0.23 PFR28_00325 Inner membrane protein YpjD — —
Pseudomonas simiae WCS417 0.72 PS417_12230 ribonuclease H 0.23 PS417_22930 cytochrome C assembly protein — —
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS12920 ribonuclease HI 0.23 PFLU_RS24590 cytochrome c assembly protein — —
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_4598 Ribonuclease HI (EC 3.1.26.4) 0.23 Pf1N1B4_875 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) — —
Pseudomonas fluorescens SBW25 0.71 PFLU_RS12920 ribonuclease HI 0.23 PFLU_RS24590 cytochrome c assembly protein — —
Pseudomonas fluorescens FW300-N2E3 0.71 AO353_23500 ribonuclease H 0.26 AO353_04395 cytochrome C assembly protein — —
Dechlorosoma suillum PS 0.69 Dsui_2482 ribonuclease HI 0.36 Dsui_1321 ABC-type uncharacterized transport system, permease component — —
Variovorax sp. SCN45 0.69 GFF1119 Ribonuclease HI (EC 3.1.26.4) 0.27 GFF4429 Inner membrane protein YpjD low > 127
Variovorax sp. OAS795 0.69 ABID97_RS14740 ribonuclease HI 0.27 ABID97_RS06430 cytochrome c biogenesis protein CcsA — —
Pseudomonas stutzeri RCH2 0.69 Psest_2073 Ribonuclease HI 0.21 Psest_3135 ABC-type uncharacterized transport system, permease component — —
Castellaniella sp019104865 MT123 0.68 ABCV34_RS10475 ribonuclease HI 0.37 ABCV34_RS09015 cytochrome c biogenesis protein CcsA — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF4259 Ribonuclease HI (EC 3.1.26.4) 0.22 GFF598 CcsA-related protein — —
Escherichia coli BL21 0.63 ECD_00207 ribonuclease HI 0.14 ECD_02500 cytochrome c assembly protein family inner membrane protein — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.63 OHPLBJKB_03447 Ribonuclease HI 0.14 OHPLBJKB_01095 Inner membrane protein YpjD low > 73
Escherichia coli ECRC101 0.63 MCAODC_00485 rnhA ribonuclease HI 0.14 MCAODC_11695 ypjD Inner membrane protein YpjD low > 87
Escherichia coli ECRC100 0.63 OKFHMN_09970 rnhA ribonuclease HI 0.14 OKFHMN_21165 ypjD Inner membrane protein YpjD low > 80
Escherichia coli ECRC102 0.63 NIAGMN_07820 rnhA ribonuclease HI 0.14 NIAGMN_18935 ypjD Inner membrane protein YpjD — —
Escherichia coli ECOR27 0.63 NOLOHH_02315 rnhA ribonuclease HI 0.14 NOLOHH_12840 ypjD Inner membrane protein YpjD low > 75
Escherichia coli ECRC99 0.63 KEDOAH_18185 rnhA ribonuclease HI 0.14 KEDOAH_07055 ypjD Inner membrane protein YpjD — —
Escherichia coli BW25113 0.63 b0214 rnhA ribonuclease H (NCBI) 0.14 b2611 ypjD predicted inner membrane protein (RefSeq) — —
Escherichia coli Nissle 1917 0.63 ECOLIN_RS01170 ribonuclease HI 0.14 ECOLIN_RS14755 inner membrane protein YpjD — —
Escherichia coli ECOR38 0.63 HEPCGN_07910 rnhA ribonuclease HI 0.14 HEPCGN_20285 ypjD Inner membrane protein YpjD low > 87
Escherichia coli ECRC98 0.63 JDDGAC_13565 rnhA ribonuclease HI 0.14 JDDGAC_24830 ypjD Inner membrane protein YpjD low > 86
Escherichia coli ECRC62 0.63 BNILDI_09355 rnhA ribonuclease HI 0.14 BNILDI_11645 ypjD Inner membrane protein YpjD low > 75
Escherichia fergusonii Becca 0.63 EFB2_03829 Ribonuclease HI 0.13 EFB2_01281 Inner membrane protein YpjD low > 86
Rhodanobacter sp. FW510-T8 0.62 OKGIIK_07990 rnhA ribonuclease HI 0.22 OKGIIK_09575 ypjD Cytochrome C assembly protein — —
Shewanella amazonensis SB2B 0.62 Sama_1881 rnhA ribonuclease H (RefSeq) 0.17 Sama_0887 hypothetical protein (RefSeq) low > 62
Rhodanobacter denitrificans MT42 0.62 LRK55_RS16500 ribonuclease HI 0.17 LRK55_RS02275 cytochrome c biogenesis protein CcsA — —
Rhodanobacter denitrificans FW104-10B01 0.62 LRK54_RS16775 ribonuclease HI 0.17 LRK54_RS02520 cytochrome c biogenesis protein CcsA — —
Shewanella loihica PV-4 0.61 Shew_2112 ribonuclease H (RefSeq) 0.18 Shew_1061 cytochrome c assembly protein (RefSeq) — —
Pantoea sp. MT58 0.61 IAI47_15330 ribonuclease HI 0.13 IAI47_04365 inner membrane protein YpjD — —
Shewanella sp. ANA-3 0.59 Shewana3_2366 rnhA ribonuclease H (RefSeq) 0.17 Shewana3_3019 cytochrome c assembly protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.59 SO2560 rnhA ribonuclease HI (NCBI ptt file) 0.17 SO1355 membrane protein, putative (NCBI ptt file) — —

Not shown: 49 genomes with orthologs for HSERO_RS17110 only; 1 genomes with orthologs for HSERO_RS01870 only