Conservation of cofitness between HGI48_RS03400 and HGI48_RS12860 in Dickeya dianthicola 67-19

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola 67-19 1.0 HGI48_RS03400 aminomethyl-transferring glycine dehydrogenase 1.0 HGI48_RS12860 FAD-binding oxidoreductase 0.65 2
Dickeya dianthicola ME23 0.98 DZA65_RS03445 aminomethyl-transferring glycine dehydrogenase 0.99 DZA65_RS13325 FAD-binding oxidoreductase low > 75
Dickeya dadantii 3937 0.93 DDA3937_RS03255 aminomethyl-transferring glycine dehydrogenase 0.97 DDA3937_RS12795 FAD-binding oxidoreductase low > 74
Pectobacterium carotovorum WPP14 0.85 HER17_RS17995 aminomethyl-transferring glycine dehydrogenase 0.86 HER17_RS08905 FAD-binding oxidoreductase low > 75
Serratia liquefaciens MT49 0.82 IAI46_20850 aminomethyl-transferring glycine dehydrogenase 0.83 IAI46_11130 FAD-binding oxidoreductase low > 86
Rahnella sp. WP5 0.82 EX31_RS21520 aminomethyl-transferring glycine dehydrogenase 0.81 EX31_RS13925 FAD-binding oxidoreductase low > 89
Pantoea sp. MT58 0.82 IAI47_03775 aminomethyl-transferring glycine dehydrogenase 0.80 IAI47_10890 FAD-binding oxidoreductase low > 76
Escherichia fergusonii Becca 0.81 EFB2_00999 Glycine dehydrogenase (decarboxylating) 0.81 EFB2_02305 hypothetical protein low > 86
Escherichia coli Nissle 1917 0.81 ECOLIN_RS16165 aminomethyl-transferring glycine dehydrogenase 0.81 ECOLIN_RS09430 FAD-binding and (Fe-S)-binding domain-containing protein low > 55
Escherichia coli ECOR38 0.81 HEPCGN_18820 gcvP aminomethyl-transferring glycine dehydrogenase 0.81 HEPCGN_05615 ydiJ Uncharacterized protein YdiJ low > 87
Escherichia coli ECRC99 0.81 KEDOAH_08610 gcvP aminomethyl-transferring glycine dehydrogenase 0.81 KEDOAH_00880 ydiJ Uncharacterized protein YdiJ
Escherichia coli ECRC98 0.81 JDDGAC_23170 gcvP aminomethyl-transferring glycine dehydrogenase 0.81 JDDGAC_01805 ydiJ Uncharacterized protein YdiJ low > 86
Escherichia coli ECRC101 0.81 MCAODC_10050 gcvP aminomethyl-transferring glycine dehydrogenase 0.81 MCAODC_18180 ydiJ Uncharacterized protein YdiJ low > 87
Escherichia coli ECRC100 0.81 OKFHMN_19530 gcvP aminomethyl-transferring glycine dehydrogenase 0.81 OKFHMN_27230 ydiJ Uncharacterized protein YdiJ low > 80
Escherichia coli ECRC102 0.81 NIAGMN_17295 gcvP aminomethyl-transferring glycine dehydrogenase 0.81 NIAGMN_00835 ydiJ Uncharacterized protein YdiJ
Escherichia coli ECRC62 0.81 BNILDI_09980 gcvP aminomethyl-transferring glycine dehydrogenase 0.81 BNILDI_16540 ydiJ Uncharacterized protein YdiJ low > 75
Escherichia coli BW25113 0.81 b2903 gcvP glycine dehydrogenase (NCBI) 0.81 b1687 ydiJ predicted FAD-linked oxidoreductase (NCBI) low > 76
Escherichia coli BL21 0.81 ECD_02735 glycine decarboxylase, PLP-dependent, subunit P of glycine cleavage complex 0.81 ECD_01656 putative FAD-linked oxidoreductase low > 61
Escherichia coli ECOR27 0.81 NOLOHH_11445 gcvP aminomethyl-transferring glycine dehydrogenase 0.81 NOLOHH_17750 ydiJ Uncharacterized protein YdiJ low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.81 OHPLBJKB_00812 Glycine dehydrogenase (decarboxylating) 0.81 OHPLBJKB_02037 hypothetical protein low > 73
Klebsiella michiganensis M5al 0.80 BWI76_RS23870 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) 0.82 BWI76_RS17050 FAD-binding oxidoreductase low > 92
Erwinia tracheiphila SCR3 0.80 LU632_RS05915 gcvP aminomethyl-transferring glycine dehydrogenase 0.80 LU632_RS11040 FAD-binding oxidoreductase 0.80 16
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.80 GFF3003 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.81 GFF3554 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD 0.49 51
Enterobacter sp. TBS_079 0.79 MPMX20_03762 Glycine dehydrogenase (decarboxylating) 0.82 MPMX20_01926 hypothetical protein low > 85
Enterobacter asburiae PDN3 0.79 EX28DRAFT_2955 glycine dehydrogenase (decarboxylating) 0.81 EX28DRAFT_1696 FAD/FMN-containing dehydrogenases low > 76
Shewanella amazonensis SB2B 0.69 Sama_2719 glycine dehydrogenase (RefSeq) 0.57 Sama_2071 oxidoreductase, FAD-binding, putative (RefSeq) low > 62
Shewanella oneidensis MR-1 0.68 SO0781 gcvP glycine cleavage system P protein (NCBI ptt file) 0.60 SO2643 oxidoreductase, FAD-binding, putative (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.67 Shewana3_3499 glycine dehydrogenase (RefSeq) 0.59 Shewana3_1737 FAD linked oxidase domain-containing protein (RefSeq) low > 73
Shewanella loihica PV-4 0.67 Shew_3062 glycine dehydrogenase (RefSeq) 0.58 Shew_1550 FAD linked oxidase domain-containing protein (RefSeq) low > 60
Pseudomonas fluorescens FW300-N1B4 0.62 Pf1N1B4_2236 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.45 Pf1N1B4_4229 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD low > 87
Pseudomonas putida KT2440 0.61 PP_5192 glycine dehydrogenase 0.48 PP_4493 D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data) low > 96
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_15330 glycine dehydrogenase (decarboxylating) 0.63 CSW01_06060 FAD-binding oxidoreductase low > 62
Paraburkholderia bryophila 376MFSha3.1 0.57 H281DRAFT_02409 glycine dehydrogenase 0.16 H281DRAFT_03563 FAD/FMN-containing dehydrogenase low > 103
Pseudomonas sp. RS175 0.57 PFR28_03383 Glycine dehydrogenase (decarboxylating) 0.46 PFR28_01530 hypothetical protein low > 88
Burkholderia phytofirmans PsJN 0.56 BPHYT_RS19330 glycine cleavage system P protein (EC 1.4.4.2) (from data) 0.16 BPHYT_RS34425 lactate dehydrogenase low > 109
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS29215 aminomethyl-transferring glycine dehydrogenase 0.16 QEN71_RS40185 FAD-binding and (Fe-S)-binding domain-containing protein low > 153
Paraburkholderia graminis OAS925 0.56 ABIE53_000238 glycine dehydrogenase 0.16 ABIE53_004693 FAD/FMN-containing dehydrogenase/Fe-S oxidoreductase low > 113
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_18170 glycine dehydrogenase 0.48 AO356_29050 hypothetical protein low > 104
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS20070 glycine dehydrogenase 0.17 RR42_RS30390 lactate dehydrogenase low > 128
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_1096 glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit 0.47 Psyr_2533 FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal low > 86
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_1096 glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit 0.47 Psyr_2533 FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal low > 86
Variovorax sp. OAS795 0.54 ABID97_RS19655 aminomethyl-transferring glycine dehydrogenase 0.16 ABID97_RS15850 FAD-linked oxidase C-terminal domain-containing protein low > 91
Variovorax sp. SCN45 0.54 GFF6478 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.15 GFF1371 Fe-S protein, homolog of lactate dehydrogenase SO1521 low > 127
Echinicola vietnamensis KMM 6221, DSM 17526 0.54 Echvi_0744 glycine dehydrogenase (decarboxylating) 0.20 Echvi_3865 FAD/FMN-containing dehydrogenases 0.36 27
Rhizobium sp. OAE497 0.53 ABIE40_RS09950 aminomethyl-transferring glycine dehydrogenase 0.44 ABIE40_RS21040 FAD-binding and (Fe-S)-binding domain-containing protein low > 107
Mucilaginibacter yixingensis YX-36 DSM 26809 0.53 ABZR88_RS01785 aminomethyl-transferring glycine dehydrogenase 0.08 ABZR88_RS15005 FAD-binding and (Fe-S)-binding domain-containing protein low > 71
Dinoroseobacter shibae DFL-12 0.53 Dshi_2680 glycine dehydrogenase (RefSeq) 0.15 Dshi_3324 FAD linked oxidase domain protein (RefSeq) low > 64

Not shown: 39 genomes with orthologs for HGI48_RS03400 only; 1 genomes with orthologs for HGI48_RS12860 only