Conservation of cofitness between HER17_RS05050 and HER17_RS21700 in Pectobacterium carotovorum WPP14

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS05050 recombination regulator RecX 1.0 HER17_RS21700 XRE family transcriptional regulator 0.69 16
Dickeya dadantii 3937 0.56 DDA3937_RS16240 recombination regulator RecX 0.24 DDA3937_RS01955 helix-turn-helix domain-containing protein low > 74
Serratia liquefaciens MT49 0.54 IAI46_03845 recombination regulator RecX 0.60 IAI46_11440 helix-turn-helix transcriptional regulator low > 86
Rahnella sp. WP5 0.49 EX31_RS07795 recombination regulator RecX 0.61 EX31_RS05710 helix-turn-helix transcriptional regulator low > 89
Escherichia coli ECOR27 0.47 NOLOHH_12550 recX recombination regulator RecX 0.53 NOLOHH_19280 sutR DNA-binding transcriptional regulator SutR low > 75
Escherichia coli Nissle 1917 0.47 ECOLIN_RS15055 recombination regulator RecX 0.53 ECOLIN_RS08275 DNA-binding transcriptional regulator SutR — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.47 OHPLBJKB_01036 Regulatory protein RecX 0.53 OHPLBJKB_02281 HTH-type transcriptional regulator SutR low > 73
Escherichia coli ECRC99 0.47 KEDOAH_07425 recX recombination regulator RecX 0.53 KEDOAH_26835 sutR DNA-binding transcriptional regulator SutR — —
Escherichia coli ECRC101 0.47 MCAODC_11235 recX recombination regulator RecX 0.53 MCAODC_16335 sutR DNA-binding transcriptional regulator SutR low > 87
Escherichia coli ECRC100 0.47 OKFHMN_20710 recX recombination regulator RecX 0.53 OKFHMN_01605 sutR DNA-binding transcriptional regulator SutR low > 80
Escherichia coli ECRC102 0.47 NIAGMN_18480 recX recombination regulator RecX 0.53 NIAGMN_25740 sutR DNA-binding transcriptional regulator SutR — —
Escherichia coli BW25113 0.47 b2698 recX RecA regulator RecX (NCBI) 0.53 b1434 ydcN predicted DNA-binding transcriptional regulator (NCBI) low > 76
Escherichia coli ECRC98 0.47 JDDGAC_24375 recX recombination regulator RecX 0.53 JDDGAC_04095 sutR DNA-binding transcriptional regulator SutR low > 86
Escherichia coli BL21 0.47 ECD_02548 regulatory protein for RecA 0.53 ECD_01392 putative DNA-binding transcriptional regulator — —
Enterobacter sp. TBS_079 0.47 MPMX20_03579 Regulatory protein RecX 0.53 MPMX20_02243 HTH-type transcriptional regulator SutR low > 85
Escherichia coli ECOR38 0.47 HEPCGN_19905 recX recombination regulator RecX 0.52 HEPCGN_26215 sutR DNA-binding transcriptional regulator SutR low > 87
Escherichia coli ECRC62 0.47 BNILDI_11110 recX recombination regulator RecX 0.53 BNILDI_17730 sutR DNA-binding transcriptional regulator SutR low > 75
Escherichia fergusonii Becca 0.47 EFB2_01226 Regulatory protein RecX 0.52 EFB2_02548 HTH-type transcriptional regulator SutR low > 86
Enterobacter asburiae PDN3 0.46 EX28DRAFT_2784 Uncharacterized protein conserved in bacteria 0.53 EX28DRAFT_1223 Cupin domain/Helix-turn-helix low > 76
Pantoea sp. MT58 0.45 IAI47_04305 regulatory protein RecX 0.48 IAI47_10265 helix-turn-helix domain-containing protein low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.43 GFF4692 Regulatory protein RecX 0.51 GFF2595 Transcriptional regulator yidN, Cro/CI family low > 78
Klebsiella michiganensis M5al 0.43 BWI76_RS22175 recombination regulator RecX 0.50 BWI76_RS13370 hypothetical protein — —
Pseudomonas sp. S08-1 0.26 OH686_18210 Regulatory protein RecX 0.16 OH686_13700 Putrescine utilization regulator low > 80
Shewanella loihica PV-4 0.25 Shew_1216 regulatory protein RecX (RefSeq) 0.20 Shew_0970 XRE family transcriptional regulator (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.24 CSW01_02880 regulatory protein RecX 0.34 CSW01_09830 XRE family transcriptional regulator low > 62
Pseudomonas fluorescens GW456-L13 0.24 PfGW456L13_4667 Regulatory protein RecX 0.17 PfGW456L13_815 Putrescine utilization regulator low > 87
Pseudomonas simiae WCS417 0.24 PS417_05820 recombinase RecX 0.18 PS417_27690 XRE family transcriptional regulator low > 88
Pseudomonas fluorescens SBW25 0.24 PFLU_RS05890 recombination regulator RecX 0.29 PFLU_RS18295 helix-turn-helix domain-containing protein — —
Pseudomonas fluorescens SBW25-INTG 0.24 PFLU_RS05890 recombination regulator RecX 0.29 PFLU_RS18295 helix-turn-helix domain-containing protein low > 109
Pseudomonas fluorescens FW300-N2C3 0.23 AO356_05665 recombinase RecX 0.31 AO356_23675 hydroxyacid dehydrogenase — —
Pseudomonas fluorescens FW300-N2E3 0.23 AO353_16810 recombinase RecX 0.18 AO353_09140 XRE family transcriptional regulator low > 101
Pseudomonas fluorescens FW300-N1B4 0.23 Pf1N1B4_3144 Regulatory protein RecX 0.31 Pf1N1B4_4417 Transcriptional regulator — —
Pseudomonas sp. RS175 0.23 PFR28_00473 Regulatory protein RecX 0.18 PFR28_04396 HTH-type transcriptional regulator PuuR low > 88
Pseudomonas stutzeri RCH2 0.23 Psest_2871 Uncharacterized protein conserved in bacteria 0.20 Psest_3791 Predicted transcriptional regulators — —
Pseudomonas fluorescens FW300-N2E2 0.23 Pf6N2E2_2992 Regulatory protein RecX 0.18 Pf6N2E2_4394 Putrescine utilization regulator low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.22 Psyr_1379 Regulatory protein RecX 0.17 Psyr_0238 Helix-turn-helix motif protein — —
Pseudomonas syringae pv. syringae B728a 0.22 Psyr_1379 Regulatory protein RecX 0.17 Psyr_0238 Helix-turn-helix motif protein low > 86
Pseudomonas putida KT2440 0.22 PP_1630 Regulatory protein RecX 0.17 PP_5268 DNA-binding transcriptional repressor PuuR-putrescine low > 96
Shewanella amazonensis SB2B 0.21 Sama_1047 hypothetical protein (RefSeq) 0.18 Sama_2646 XRE family transcriptional regulator (RefSeq) low > 62
Castellaniella sp019104865 MT123 0.19 ABCV34_RS04455 recombination regulator RecX 0.14 ABCV34_RS09100 XRE family transcriptional regulator low > 48
Ralstonia solanacearum PSI07 0.17 RPSI07_RS21255 recombination regulator RecX 0.21 RPSI07_RS09440 helix-turn-helix domain-containing protein — —
Ralstonia sp. UNC404CL21Col 0.17 ABZR87_RS07970 recombination regulator RecX 0.22 ABZR87_RS22690 XRE family transcriptional regulator low > 80
Ralstonia solanacearum GMI1000 0.17 RS_RS02765 regulatory protein RecX 0.22 RS_RS21755 XRE family transcriptional regulator low > 80

Not shown: 10 genomes with orthologs for HER17_RS05050 only; 26 genomes with orthologs for HER17_RS21700 only