Conservation of cofitness between HER17_RS18680 and HER17_RS21245 in Pectobacterium carotovorum WPP14

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS18680 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 1.0 HER17_RS21245 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.58 10
Dickeya dadantii 3937 0.77 DDA3937_RS02850 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.86 DDA3937_RS21255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 74
Dickeya dianthicola ME23 0.75 DZA65_RS03000 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.85 DZA65_RS00045 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 75
Dickeya dianthicola 67-19 0.75 HGI48_RS02825 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.86 HGI48_RS00055 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 71
Serratia liquefaciens MT49 0.68 IAI46_22185 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.82 IAI46_24235 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 86
Klebsiella michiganensis M5al 0.63 BWI76_RS24680 23S rRNA (guanine(1835)-N(2))-methyltransferase 0.81 BWI76_RS26680 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 92
Escherichia coli ECRC99 0.63 KEDOAH_09585 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.82 KEDOAH_11735 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECRC102 0.63 NIAGMN_16325 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.82 NIAGMN_14175 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECRC100 0.63 OKFHMN_18560 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.82 OKFHMN_16410 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 80
Escherichia coli ECRC98 0.63 JDDGAC_22195 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.82 JDDGAC_20040 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 86
Escherichia coli ECRC101 0.63 MCAODC_09075 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.82 MCAODC_06925 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 87
Escherichia coli Nissle 1917 0.63 ECOLIN_RS17790 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.82 ECOLIN_RS19990 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia fergusonii Becca 0.62 EFB2_00728 Ribosomal RNA large subunit methyltransferase G 0.82 EFB2_00316 Ribosomal RNA large subunit methyltransferase J low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.62 GFF3186 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) 0.82 GFF515 Protein involved in catabolism of external DNA low > 78
Escherichia coli BW25113 0.62 b3084 ygjO putative enzyme (VIMSS) 0.82 b3499 yhiR predicted DNA (exogenous) processing protein (NCBI) low > 76
Escherichia coli BL21 0.62 ECD_02953 23S rRNA m(2)G1835 methyltransferase, SAM-dependent 0.82 ECD_03348 23S rRNA m(6)A2030 methyltransferase, SAM-dependent low > 61
Escherichia coli ECOR38 0.62 HEPCGN_17415 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.82 HEPCGN_15320 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 87
Escherichia coli ECOR27 0.62 NOLOHH_10360 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.82 NOLOHH_08345 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 75
Escherichia coli ECRC62 0.62 BNILDI_01155 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.82 BNILDI_03215 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 75
Rahnella sp. WP5 0.62 EX31_RS08350 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.82 EX31_RS05170 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 89
Erwinia tracheiphila SCR3 0.62 LU632_RS02335 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.79 LU632_RS19485 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 74
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_00618 Ribosomal RNA large subunit methyltransferase G 0.82 OHPLBJKB_00204 Ribosomal RNA large subunit methyltransferase J low > 73
Enterobacter asburiae PDN3 0.61 EX28DRAFT_3153 16S RNA G1207 methylase RsmC 0.83 EX28DRAFT_4062 Protein involved in catabolism of external DNA low > 76
Pantoea sp. MT58 0.61 IAI47_02950 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.81 IAI47_01340 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 76
Enterobacter sp. TBS_079 0.61 MPMX20_03995 Ribosomal RNA large subunit methyltransferase G 0.83 MPMX20_04398 Ribosomal RNA large subunit methyltransferase J low > 85
Alteromonas macleodii MIT1002 0.40 MIT1002_00689 Ribosomal RNA large subunit methyltransferase G 0.33 MIT1002_02015 Ribosomal RNA large subunit methyltransferase J low > 70
Pseudomonas sp. S08-1 0.36 OH686_16135 23S rRNA (guanine(1835)-N(2))-methyltransferase 0.40 OH686_09780 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 80
Pseudomonas putida KT2440 0.36 PP_4648 Ribosomal RNA large subunit methyltransferase G 0.43 PP_4945 23S rRNA m(6)A2030 methyltransferase low > 96
Pseudomonas stutzeri RCH2 0.36 Psest_3440 16S RNA G1207 methylase RsmC 0.41 Psest_0408 Protein involved in catabolism of external DNA low > 67
Shewanella loihica PV-4 0.36 Shew_2886 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) 0.48 Shew_3648 hypothetical protein (RefSeq) low > 60
Shewanella oneidensis MR-1 0.36 SO1097 conserved hypothetical protein (NCBI ptt file) 0.47 SO4659 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.36 Shewana3_0932 methyltransferase small (RefSeq) 0.47 Shewana3_4038 hypothetical protein (RefSeq) low > 73
Pseudomonas fluorescens GW456-L13 0.36 PfGW456L13_1438 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) 0.40 PfGW456L13_219 Protein involved in catabolism of external DNA low > 87
Vibrio cholerae E7946 ATCC 55056 0.36 CSW01_11685 ribosomal RNA large subunit methyltransferase G 0.62 CSW01_01005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 62
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS26260 class I SAM-dependent methyltransferase 0.40 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 109
Pseudomonas fluorescens SBW25 0.35 PFLU_RS26260 class I SAM-dependent methyltransferase 0.40 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 109
Pseudomonas simiae WCS417 0.35 PS417_24335 50S rRNA methyltransferase 0.40 PS417_02200 lactate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_13950 50S rRNA methyltransferase 0.40 AO353_12840 lactate dehydrogenase low > 101
Pseudomonas sp. RS175 0.35 PFR28_03798 Ribosomal RNA large subunit methyltransferase G 0.41 PFR28_05056 Ribosomal RNA large subunit methyltransferase J low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_4279 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase 0.38 Psyr_4772 Protein of unknown function DUF519 low > 86
Pseudomonas fluorescens FW300-N1B4 0.34 Pf1N1B4_2763 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) 0.40 Pf1N1B4_1481 Protein involved in catabolism of external DNA low > 87
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_4279 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase 0.38 Psyr_4772 Protein of unknown function DUF519 low > 86
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_5071 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) 0.40 Pf6N2E2_3679 Protein involved in catabolism of external DNA low > 103
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_15650 50S rRNA methyltransferase 0.40 AO356_08990 lactate dehydrogenase low > 104
Shewanella amazonensis SB2B 0.34 Sama_2548 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) 0.49 Sama_3563 hypothetical protein (RefSeq) low > 62
Marinobacter adhaerens HP15 0.23 HP15_2265 rRNA (guanine-N2-)-methyltransferase, RsmD 0.30 HP15_2563 protein containing DUF519 low > 73

Not shown: 0 genomes with orthologs for HER17_RS18680 only; 35 genomes with orthologs for HER17_RS21245 only