Conservation of cofitness between HER17_RS02000 and HER17_RS20040 in Pectobacterium carotovorum WPP14

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS02000 two-component system response regulator PmrA 1.0 HER17_RS20040 3-deoxy-manno-octulosonate-8-phosphatase KdsC 0.59 20
Dickeya dianthicola ME23 0.88 DZA65_RS20570 two-component system response regulator PmrA 0.85 DZA65_RS01530 3-deoxy-manno-octulosonate-8-phosphatase KdsC low > 75
Dickeya dianthicola 67-19 0.88 HGI48_RS19450 two-component system response regulator PmrA 0.85 HGI48_RS01465 3-deoxy-manno-octulosonate-8-phosphatase KdsC low > 71
Dickeya dadantii 3937 0.87 DDA3937_RS19350 two-component system response regulator PmrA 0.85 DDA3937_RS01550 3-deoxy-manno-octulosonate-8-phosphatase KdsC 0.50 66
Enterobacter asburiae PDN3 0.69 EX28DRAFT_3235 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.77 EX28DRAFT_3252 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family low > 76
Rahnella sp. WP5 0.67 EX31_RS08605 two-component system response regulator PmrA 0.82 EX31_RS12420 3-deoxy-manno-octulosonate-8-phosphatase KdsC 0.37 39
Enterobacter sp. TBS_079 0.64 MPMX20_04087 Transcriptional regulatory protein BasR 0.77 MPMX20_04104 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF1469 Transcriptional regulatory protein basR/pmrA 0.77 GFF2942 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) low > 78
Escherichia fergusonii Becca 0.64 EFB2_04469 Transcriptional regulatory protein BasR 0.78 EFB2_00625 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC low > 86
Escherichia coli Nissle 1917 0.64 ECOLIN_RS23805 two-component system response regulator BasR 0.78 ECOLIN_RS18405 3-deoxy-manno-octulosonate-8-phosphatase KdsC low > 55
Escherichia coli ECOR38 0.64 HEPCGN_11205 basR two-component system response regulator BasR 0.78 HEPCGN_16835 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC low > 87
Escherichia coli ECRC100 0.64 OKFHMN_12570 basR two-component system response regulator BasR 0.78 OKFHMN_17960 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC low > 80
Escherichia coli BW25113 0.64 b4113 basR DNA-binding response regulator in two-component regulatory system with BasS (NCBI) 0.78 b3198 kdsC 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) low > 76
Escherichia coli ECRC102 0.63 NIAGMN_10415 basR two-component system response regulator BasR 0.78 NIAGMN_15720 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC — —
Escherichia coli ECRC98 0.63 JDDGAC_16205 basR two-component system response regulator BasR 0.78 JDDGAC_21585 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC low > 86
Escherichia coli ECRC101 0.63 MCAODC_03080 basR two-component system response regulator BasR 0.78 MCAODC_08480 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC low > 87
Escherichia coli ECRC62 0.63 BNILDI_06655 basR two-component system response regulator BasR 0.78 BNILDI_01775 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC low > 75
Escherichia coli BL21 0.63 ECD_03984 response regulator in two-component regulatory system with BasS 0.78 ECD_03063 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase low > 61
Escherichia coli ECOR27 0.63 NOLOHH_04835 basR two-component system response regulator BasR 0.78 NOLOHH_09760 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC low > 75
Escherichia coli ECRC99 0.63 KEDOAH_15595 basR two-component system response regulator BasR 0.78 KEDOAH_10190 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.63 OHPLBJKB_03931 Transcriptional regulatory protein BasR 0.78 OHPLBJKB_00502 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC low > 73
Klebsiella michiganensis M5al 0.62 BWI76_RS08795 DNA-binding response regulator 0.79 BWI76_RS25245 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase low > 92
Erwinia tracheiphila SCR3 0.60 LU632_RS21175 pmrA two-component system response regulator PmrA 0.79 LU632_RS21260 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC low > 74
Pantoea sp. MT58 0.57 IAI47_08260 two-component system response regulator PmrA 0.80 IAI47_17165 3-deoxy-manno-octulosonate-8-phosphatase KdsC low > 76
Serratia liquefaciens MT49 0.57 IAI46_01870 two-component system response regulator PmrA 0.81 IAI46_22450 3-deoxy-manno-octulosonate-8-phosphatase KdsC low > 86
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS12650 response regulator 0.41 ABZR86_RS19835 HAD family hydrolase — —
Alteromonas macleodii MIT1002 0.41 MIT1002_00810 Transcriptional regulatory protein BasR 0.45 MIT1002_00831 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC — —
Dechlorosoma suillum PS 0.41 Dsui_0266 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain 0.34 Dsui_1381 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family low > 51
Acidovorax sp. GW101-3H11 0.41 Ac3H11_1263 Response regulator receiver:Transcriptional regulatory protein, C- terminal 0.32 Ac3H11_4271 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) low > 79
Vibrio cholerae E7946 ATCC 55056 0.40 CSW01_19595 DNA-binding response regulator 0.60 CSW01_12795 3-deoxy-manno-octulosonate-8-phosphatase KdsC — —
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_14050 ompR DNA-binding response regulator 0.35 OKGIIK_02285 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC — —
Ralstonia sp. UNC404CL21Col 0.39 ABZR87_RS07960 response regulator transcription factor 0.38 ABZR87_RS07080 HAD family hydrolase low > 80
Marinobacter adhaerens HP15 0.39 HP15_2937 two component transcriptional regulator, winged helix family 0.41 HP15_2438 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family — —
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS07600 response regulator 0.38 LRK54_RS12895 HAD hydrolase family protein — —
Rhodanobacter denitrificans MT42 0.39 LRK55_RS07340 response regulator 0.38 LRK55_RS12595 HAD hydrolase family protein — —
Shewanella loihica PV-4 0.38 Shew_0583 two component transcriptional regulator (RefSeq) 0.58 Shew_3307 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (RefSeq) — —
Ralstonia solanacearum GMI1000 0.36 RS_RS02755 DNA-binding response regulator 0.39 RS_RS02040 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase low > 80
Shewanella amazonensis SB2B 0.36 Sama_3006 response regulator receiver protein (RefSeq) 0.54 Sama_3084 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (RefSeq) — —
Pedobacter sp. GW460-11-11-14-LB5 0.34 CA265_RS00370 DNA-binding response regulator 0.27 CA265_RS03520 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase low > 88
Parabacteroides merdae CL09T00C40 0.31 HMPREF1078_RS17705 response regulator transcription factor 0.27 HMPREF1078_RS00030 HAD-IIIA family hydrolase low > 61

Not shown: 10 genomes with orthologs for HER17_RS02000 only; 42 genomes with orthologs for HER17_RS20040 only