Conservation of cofitness between HER17_RS15240 and HER17_RS16100 in Pectobacterium carotovorum WPP14

51 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 1.0 HER17_RS16100 type II asparaginase 0.57 16
Dickeya dadantii 3937 0.98 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.79 DDA3937_RS05385 asparaginase — —
Dickeya dianthicola ME23 0.98 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.78 DZA65_RS05765 asparaginase low > 75
Dickeya dianthicola 67-19 0.97 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.79 HGI48_RS05445 asparaginase — —
Serratia liquefaciens MT49 0.95 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.78 IAI46_12730 type II asparaginase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF4549 LSU m3Psi1915 methyltransferase RlmH 0.72 GFF512 L-asparaginase (EC 3.5.1.1) low > 78
Escherichia coli Nissle 1917 0.90 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 ECOLIN_RS16445 L-asparaginase 2 — —
Escherichia coli BW25113 0.90 b0636 ybeA hypothetical protein (NCBI) 0.38 b2957 ansB periplasmic L-asparaginase II (NCBI) low > 76
Escherichia coli BL21 0.90 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent 0.38 ECD_02787 periplasmic L-asparaginase 2 — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.90 OHPLBJKB_03070 Ribosomal RNA large subunit methyltransferase H 0.38 OHPLBJKB_00759 L-asparaginase 2 — —
Klebsiella michiganensis M5al 0.90 BWI76_RS08040 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.75 BWI76_RS11360 L-asparaginase low > 92
Escherichia coli ECRC62 0.90 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 BNILDI_09665 ansB L-asparaginase 2 — —
Escherichia coli ECRC101 0.90 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 MCAODC_09740 ansB L-asparaginase 2 0.42 75
Escherichia fergusonii Becca 0.90 EFB2_03456 Ribosomal RNA large subunit methyltransferase H 0.38 EFB2_00945 L-asparaginase 2 low > 86
Escherichia coli ECRC98 0.90 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 JDDGAC_22850 ansB L-asparaginase 2 — —
Escherichia coli ECOR27 0.90 NOLOHH_23735 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 NOLOHH_11080 ansB L-asparaginase 2 low > 75
Escherichia coli ECOR38 0.90 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 HEPCGN_18490 ansB L-asparaginase 2 low > 87
Escherichia coli ECRC102 0.90 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 NIAGMN_16985 ansB L-asparaginase 2 — —
Escherichia coli ECRC100 0.90 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 OKFHMN_19220 ansB L-asparaginase 2 low > 80
Escherichia coli ECRC99 0.90 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 KEDOAH_08920 ansB L-asparaginase 2 — —
Pseudomonas putida KT2440 0.61 PP_4808 23S rRNA m3psi1915 methyltransferase 0.38 PP_2453 Glutaminase-asparaginase low > 96
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_06480 50S rRNA methyltransferase 0.41 AO353_20805 glutaminase low > 101
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_2691 LSU m3Psi1915 methyltransferase RlmH 0.37 Pf1N1B4_6037 L-asparaginase (EC 3.5.1.1) — —
Pseudomonas fluorescens SBW25 0.61 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.37 PFLU_RS20385 asparaginase low > 109
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_1359 LSU m3Psi1915 methyltransferase RlmH 0.37 PfGW456L13_3914 L-asparaginase (EC 3.5.1.1) low > 87
Pseudomonas simiae WCS417 0.61 PS417_24730 50S rRNA methyltransferase 0.37 PS417_18410 glutaminase — —
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.37 PFLU_RS20385 asparaginase low > 109
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS24420 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.58 QEN71_RS11755 type II asparaginase low > 153
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS09055 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.26 ABZR86_RS00900 asparaginase low > 74
Paraburkholderia graminis OAS925 0.50 ABIE53_001541 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.40 ABIE53_001995 L-asparaginase — —
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_04517 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.40 H281DRAFT_00783 L-asparaginase low > 103
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS06385 ribosomal RNA large subunit methyltransferase H 0.38 BPHYT_RS08815 L-asparaginase (EC 3.5.1.1) (from data) low > 109
Herbaspirillum seropedicae SmR1 0.49 HSERO_RS17780 50S rRNA methyltransferase 0.46 HSERO_RS19635 L-asparaginase low > 78
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS04710 50S rRNA methyltransferase 0.39 RR42_RS26140 glutaminase low > 128
Acinetobacter radioresistens SK82 0.48 MPMX26_02301 Ribosomal RNA large subunit methyltransferase H 0.36 MPMX26_02878 Glutaminase-asparaginase low > 36
Variovorax sp. OAS795 0.48 ABID97_RS16715 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 ABID97_RS25285 asparaginase low > 91
Variovorax sp. SCN45 0.48 GFF298 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase (EC 2.1.1.177) 0.40 GFF1977 L-asparaginase (EC 3.5.1.1) low > 127
Ralstonia solanacearum GMI1000 0.46 RS_RS11015 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 RS_RS06550 asparaginase — —
Ralstonia solanacearum PSI07 0.46 RPSI07_RS13660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 RPSI07_RS17595 asparaginase low > 81
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS15430 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 ABZR87_RS11340 asparaginase low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF4529 LSU m3Psi1915 methyltransferase RlmH 0.19 GFF4502 L-asparaginase (EC 3.5.1.1) low > 90
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS03565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.34 RALBFv3_RS15770 asparaginase — —
Ralstonia solanacearum UW163 0.45 UW163_RS10105 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.34 UW163_RS13215 asparaginase — —
Castellaniella sp019104865 MT123 0.45 ABCV34_RS02530 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.41 ABCV34_RS07765 asparaginase low > 48
Acidovorax sp. GW101-3H11 0.45 Ac3H11_2418 LSU m3Psi1915 methyltransferase RlmH 0.36 Ac3H11_1866 L-asparaginase (EC 3.5.1.1) low > 79
Phocaeicola vulgatus CL09T03C04 0.32 HMPREF1058_RS15935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.45 HMPREF1058_RS18010 L-asparaginase 2 low > 67
Phocaeicola dorei CL03T12C01 0.31 ABI39_RS11895 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.46 ABI39_RS14325 L-asparaginase 2 low > 72
Bacteroides stercoris CC31F 0.31 HMPREF1181_RS10755 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.45 HMPREF1181_RS11260 L-asparaginase 2 low > 56
Bacteroides thetaiotaomicron VPI-5482 0.29 BT1562 conserved hypothetical protein (NCBI ptt file) 0.45 BT2757 L-asparaginase II precursor (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.29 BACOVA_04305 putative rRNA large subunit m3Psi methyltransferase RlmH 0.46 BACOVA_01071 L-asparaginase, type II low > 94
Azospirillum sp. SherDot2 0.27 MPMX19_01940 Ribosomal RNA large subunit methyltransferase H 0.50 MPMX19_02859 L-asparaginase 2 low > 112
Agrobacterium fabrum C58 0.24 Atu2776 hypothetical protein 0.12 Atu3791 L-asparaginase low > 89

Not shown: 45 genomes with orthologs for HER17_RS15240 only; 2 genomes with orthologs for HER17_RS16100 only