Conservation of cofitness between HER17_RS19160 and HER17_RS11615 in Pectobacterium carotovorum WPP14

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS19160 TIGR00645 family protein 1.0 HER17_RS11615 23S rRNA pseudouridine(2457) synthase RluE 0.49 18
Erwinia tracheiphila SCR3 0.84 LU632_RS00860 TIGR00645 family protein 0.62 LU632_RS14565 rluE 23S rRNA pseudouridine(2457) synthase RluE low > 74
Klebsiella michiganensis M5al 0.83 BWI76_RS24270 membrane protein 0.70 BWI76_RS11325 23S rRNA pseudouridine synthase E — —
Enterobacter sp. TBS_079 0.83 MPMX20_03846 hypothetical protein 0.72 MPMX20_01819 Ribosomal large subunit pseudouridine synthase E low > 85
Enterobacter asburiae PDN3 0.83 EX28DRAFT_3040 TIGR00645 family protein 0.73 EX28DRAFT_1795 pseudouridine synthase low > 76
Serratia liquefaciens MT49 0.81 IAI46_12210 TIGR00645 family protein 0.72 IAI46_10455 23S rRNA pseudouridine(2457) synthase RluE 0.40 52
Pantoea sp. MT58 0.81 IAI47_01255 TIGR00645 family protein 0.67 IAI47_11905 23S rRNA pseudouridine(2457) synthase RluE low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.81 GFF3112 Putative membrane protein 0.75 GFF3421 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) low > 78
Escherichia coli ECRC102 0.80 NIAGMN_16750 yqhA UPF0114 protein YqhA 0.74 NIAGMN_24900 rluE 23S rRNA pseudouridine(2457) synthase RluE — —
Escherichia coli ECRC101 0.80 MCAODC_09500 yqhA UPF0114 protein YqhA 0.74 MCAODC_22330 rluE 23S rRNA pseudouridine(2457) synthase RluE low > 87
Escherichia coli ECRC62 0.80 BNILDI_00755 yqhA UPF0114 protein YqhA 0.75 BNILDI_19055 rluE 23S rRNA pseudouridine(2457) synthase RluE low > 75
Escherichia coli ECOR27 0.80 NOLOHH_10760 yqhA UPF0114 protein YqhA 0.75 NOLOHH_20890 rluE 23S rRNA pseudouridine(2457) synthase RluE low > 75
Escherichia coli ECRC99 0.80 KEDOAH_09160 yqhA UPF0114 protein YqhA 0.74 KEDOAH_24840 rluE 23S rRNA pseudouridine(2457) synthase RluE — —
Escherichia fergusonii Becca 0.80 EFB2_00806 hypothetical protein 0.75 EFB2_02840 Ribosomal large subunit pseudouridine synthase E low > 86
Escherichia coli ECRC98 0.80 JDDGAC_22620 yqhA UPF0114 protein YqhA 0.74 JDDGAC_06610 rluE 23S rRNA pseudouridine(2457) synthase RluE low > 86
Escherichia coli BL21 0.80 ECD_02877 UPF0114 family putative inner membrane protein 0.74 ECD_01133 23S rRNA pseudouridine(2457) synthase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.80 OHPLBJKB_00697 hypothetical protein 0.74 OHPLBJKB_02533 Ribosomal large subunit pseudouridine synthase E low > 73
Escherichia coli ECRC100 0.80 OKFHMN_18985 yqhA UPF0114 protein YqhA 0.74 OKFHMN_00755 rluE 23S rRNA pseudouridine(2457) synthase RluE low > 80
Escherichia coli ECOR38 0.80 HEPCGN_17845 yqhA UPF0114 protein YqhA 0.72 HEPCGN_24230 rluE 23S rRNA pseudouridine(2457) synthase RluE low > 87
Escherichia coli BW25113 0.80 b3002 yqhA hypothetical protein (NCBI) 0.75 b1135 ymfC orf, hypothetical protein (VIMSS) low > 76
Dickeya dadantii 3937 0.79 DDA3937_RS04680 TIGR00645 family protein 0.74 DDA3937_RS11475 23S rRNA pseudouridine(2457) synthase RluE low > 74
Dickeya dianthicola 67-19 0.78 HGI48_RS04635 TIGR00645 family protein 0.73 HGI48_RS11520 23S rRNA pseudouridine(2457) synthase RluE low > 71
Dickeya dianthicola ME23 0.78 DZA65_RS04555 TIGR00645 family protein 0.74 DZA65_RS11855 23S rRNA pseudouridine(2457) synthase RluE low > 75
Pseudomonas sp. S08-1 0.74 OH686_16270 Putative inner membrane protein 0.51 OH686_08840 LSU rRNA pseudouridine(2457) synthase low > 80
Pseudomonas syringae pv. syringae B728a 0.73 Psyr_4257 Uncharacterized protein UPF0114 0.52 Psyr_4336 ribosomal large subunit pseudouridine synthase E low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.73 Psyr_4257 Uncharacterized protein UPF0114 0.52 Psyr_4336 ribosomal large subunit pseudouridine synthase E low > 86
Pseudomonas fluorescens FW300-N2E3 0.73 AO353_14070 hypothetical protein 0.53 AO353_06330 pseudouridine synthase low > 101
Pseudomonas stutzeri RCH2 0.72 Psest_3394 TIGR00645 family protein 0.50 Psest_0568 pseudouridine synthase low > 67
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_5095 Putative inner membrane protein (Fragment) 0.51 Pf6N2E2_5028 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) low > 103
Pseudomonas sp. RS175 0.72 PFR28_03777 hypothetical protein 0.52 PFR28_03839 Ribosomal large subunit pseudouridine synthase E low > 88
Pseudomonas fluorescens GW456-L13 0.72 PfGW456L13_1462 Putative inner membrane protein (Fragment) 0.53 PfGW456L13_1389 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) low > 87
Pseudomonas putida KT2440 0.72 PP_0682 conserved inner membrane protein of unknown function, UPF0114 family 0.51 PP_4778 23S rRNA pseudouridine 2457 synthase low > 96
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_15775 hypothetical protein 0.52 AO356_15455 pseudouridine synthase low > 104
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_2791 Putative inner membrane protein (Fragment) 0.52 Pf1N1B4_2722 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) low > 87
Pseudomonas fluorescens SBW25 0.70 PFLU_RS26135 TIGR00645 family protein 0.53 PFLU_RS26510 pseudouridine synthase low > 109
Pseudomonas simiae WCS417 0.70 PS417_24215 hypothetical protein 0.52 PS417_24580 pseudouridine synthase — —
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS26135 TIGR00645 family protein 0.53 PFLU_RS26510 pseudouridine synthase low > 109
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_01105 hypothetical protein 0.57 CSW01_05785 23S rRNA pseudouridine synthase E low > 62
Azospirillum sp. SherDot2 0.52 MPMX19_01767 hypothetical protein 0.51 MPMX19_00077 Ribosomal large subunit pseudouridine synthase E low > 112
Azospirillum brasilense Sp245 0.50 AZOBR_RS06580 hypothetical protein 0.54 AZOBR_RS03795 Pseudouridine synthase low > 97
Rhodospirillum rubrum S1H 0.46 Rru_A3669 Uncharacterized protein UPF0114 (NCBI) 0.48 Rru_A1939 Pseudouridine synthase, Rsu (NCBI) low > 58
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS23775 TIGR00645 family protein 0.39 QEN71_RS02975 pseudouridine synthase low > 153
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS06990 membrane protein 0.40 BPHYT_RS15735 pseudouridine synthase low > 109
Paraburkholderia graminis OAS925 0.38 ABIE53_001663 uncharacterized protein (TIGR00645 family) 0.42 ABIE53_003318 23S rRNA pseudouridine2457 synthase low > 113
Kangiella aquimarina DSM 16071 0.34 B158DRAFT_1501 TIGR00645 family protein 0.46 B158DRAFT_1837 ribosomal large subunit pseudouridine synthase E (EC 5.4.99.-) low > 40
Variovorax sp. SCN45 0.34 GFF476 InterPro IPR005134 COGs COG2862 0.48 GFF6670 LSU rRNA pseudouridine(2457) synthase (EC 5.4.99.20) low > 127
Dyella japonica UNC79MFTsu3.2 0.33 ABZR86_RS11550 TIGR00645 family protein 0.46 ABZR86_RS13170 pseudouridine synthase low > 74
Lysobacter sp. OAE881 0.33 ABIE51_RS01975 TIGR00645 family protein 0.44 ABIE51_RS00615 pseudouridine synthase low > 62
Herbaspirillum seropedicae SmR1 0.30 HSERO_RS07765 membrane protein 0.44 HSERO_RS07010 pseudouridine synthase low > 78

Not shown: 19 genomes with orthologs for HER17_RS19160 only; 13 genomes with orthologs for HER17_RS11615 only