Conservation of cofitness between GFF1826 and GFF84 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF1826 Alkylated DNA repair protein AlkB 1.0 GFF84 ATP-dependent helicase HrpB 0.50 19
Escherichia coli ECRC101 0.82 MCAODC_14265 alkB DNA oxidative demethylase AlkB 0.81 MCAODC_00845 hrpB ATP-dependent helicase HrpB low > 87
Escherichia coli ECRC102 0.82 NIAGMN_20980 alkB DNA oxidative demethylase AlkB 0.81 NIAGMN_08180 hrpB ATP-dependent helicase HrpB — —
Escherichia coli ECRC100 0.82 OKFHMN_23215 alkB DNA oxidative demethylase AlkB 0.81 OKFHMN_10330 hrpB ATP-dependent helicase HrpB low > 80
Escherichia coli ECRC99 0.82 KEDOAH_04970 alkB DNA oxidative demethylase AlkB 0.81 KEDOAH_17825 hrpB ATP-dependent helicase HrpB — —
Escherichia coli ECRC98 0.82 JDDGAC_27175 alkB DNA oxidative demethylase AlkB 0.81 JDDGAC_13925 hrpB ATP-dependent helicase HrpB low > 86
Escherichia coli BW25113 0.82 b2212 alkB oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions (NCBI) 0.81 b0148 hrpB helicase, ATP-dependent (VIMSS) low > 76
Escherichia coli BL21 0.82 ECD_02139 oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions 0.81 ECD_00147 putative ATP-dependent helicase low > 61
Escherichia coli Nissle 1917 0.82 ECOLIN_RS26540 DNA oxidative demethylase AlkB 0.81 ECOLIN_RS00830 ATP-dependent helicase HrpB — —
Escherichia fergusonii Becca 0.82 EFB2_01643 Alpha-ketoglutarate-dependent dioxygenase AlkB 0.81 EFB2_03896 ATP-dependent RNA helicase HrpB low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.81 OHPLBJKB_01498 Alpha-ketoglutarate-dependent dioxygenase AlkB 0.81 OHPLBJKB_03514 hypothetical protein low > 73
Escherichia coli ECRC62 0.81 BNILDI_13710 alkB DNA oxidative demethylase AlkB 0.81 BNILDI_08995 hrpB ATP-dependent helicase HrpB low > 75
Escherichia coli ECOR27 0.81 NOLOHH_14790 alkB DNA oxidative demethylase AlkB 0.81 NOLOHH_02675 hrpB ATP-dependent helicase HrpB low > 75
Escherichia coli ECOR38 0.80 HEPCGN_22480 alkB DNA oxidative demethylase AlkB 0.82 HEPCGN_08280 hrpB ATP-dependent helicase HrpB low > 87
Enterobacter sp. TBS_079 0.73 MPMX20_03172 Alpha-ketoglutarate-dependent dioxygenase AlkB 0.76 MPMX20_00834 ATP-dependent RNA helicase HrpB low > 85
Enterobacter asburiae PDN3 0.72 EX28DRAFT_0364 Alkylated DNA repair protein 0.77 EX28DRAFT_3737 ATP-dependent helicase HrpB low > 76
Klebsiella michiganensis M5al 0.72 BWI76_RS19890 alpha-ketoglutarate-dependent dioxygenase AlkB 0.77 BWI76_RS05030 ATP-dependent helicase low > 92
Pantoea sp. MT58 0.61 IAI47_06530 DNA oxidative demethylase AlkB 0.59 IAI47_15620 ATP-dependent helicase HrpB low > 76
Marinobacter adhaerens HP15 0.60 HP15_1028 alkylated DNA repair protein AlkB 0.39 HP15_3782 RNA helicase, ATP-dependent DEAH box, HrpB type low > 73
Dickeya dianthicola ME23 0.59 DZA65_RS04440 DNA oxidative demethylase AlkB 0.56 DZA65_RS17120 ATP-dependent helicase HrpB low > 75
Dickeya dadantii 3937 0.59 DDA3937_RS04560 DNA oxidative demethylase AlkB 0.55 DDA3937_RS15920 ATP-dependent helicase HrpB 0.34 19
Rahnella sp. WP5 0.58 EX31_RS03140 DNA oxidative demethylase AlkB 0.60 EX31_RS03235 ATP-dependent helicase HrpB low > 89
Pectobacterium carotovorum WPP14 0.57 HER17_RS17090 DNA oxidative demethylase AlkB 0.57 HER17_RS05595 ATP-dependent helicase HrpB low > 75
Dickeya dianthicola 67-19 0.56 HGI48_RS04520 DNA oxidative demethylase AlkB 0.57 HGI48_RS16035 ATP-dependent helicase HrpB low > 71
Rhodopseudomonas palustris CGA009 0.56 TX73_008860 DNA oxidative demethylase AlkB 0.37 TX73_002770 ATP-dependent helicase HrpB low > 86
Pseudomonas sp. RS175 0.54 PFR28_02492 Alpha-ketoglutarate-dependent dioxygenase AlkB 0.38 PFR28_03833 ATP-dependent RNA helicase HrpB low > 88
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_437 Alkylated DNA repair protein AlkB 0.38 Pf6N2E2_5038 ATP-dependent helicase HrpB low > 103
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_5023 Alkylated DNA repair protein AlkB 0.38 Pf1N1B4_2728 ATP-dependent helicase HrpB low > 87
Pseudomonas fluorescens FW300-N2C3 0.53 AO356_22760 alpha-ketoglutarate-dependent dioxygenase 0.38 AO356_15485 ATP-dependent helicase low > 104
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_2985 DNA-N1-methyladenine dioxygenase 0.37 Psyr_4320 ATP-dependent helicase HrpB low > 86
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_2985 DNA-N1-methyladenine dioxygenase 0.37 Psyr_4320 ATP-dependent helicase HrpB low > 86
Pseudomonas fluorescens GW456-L13 0.52 PfGW456L13_2915 Alkylated DNA repair protein AlkB 0.38 PfGW456L13_1395 ATP-dependent helicase HrpB low > 87
Serratia liquefaciens MT49 0.52 IAI46_16945 DNA oxidative demethylase AlkB 0.63 IAI46_21195 ATP-dependent helicase HrpB low > 86
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_27010 alpha-ketoglutarate-dependent dioxygenase 0.38 AO353_06300 ATP-dependent helicase low > 101
Pseudomonas fluorescens SBW25-INTG 0.52 PFLU_RS14510 DNA oxidative demethylase AlkB 0.38 PFLU_RS26480 ATP-dependent helicase HrpB low > 109
Pseudomonas fluorescens SBW25 0.52 PFLU_RS14510 DNA oxidative demethylase AlkB 0.38 PFLU_RS26480 ATP-dependent helicase HrpB low > 109
Rhodanobacter denitrificans MT42 0.51 LRK55_RS17960 DNA oxidative demethylase AlkB 0.33 LRK55_RS09655 ATP-dependent helicase HrpB low > 63
Rhodanobacter sp. FW510-T8 0.51 OKGIIK_07205 alkB DNA oxidative demethylase AlkB 0.33 OKGIIK_16270 hrpA HrpA-like RNA helicase low > 52
Pseudomonas putida KT2440 0.50 PP_3400 alpha-ketoglutarate- and Fe(II)-dependent dioxygenase 0.36 PP_4772 ATP-dependent helicase HrpB low > 96
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS18105 DNA oxidative demethylase AlkB 0.32 LRK54_RS10015 ATP-dependent helicase HrpB low > 59
Pseudomonas simiae WCS417 0.50 PS417_14100 alpha-ketoglutarate-dependent dioxygenase 0.38 PS417_24550 ATP-dependent helicase low > 88
Rhizobium sp. OAE497 0.32 ABIE40_RS19425 alpha-ketoglutarate-dependent dioxygenase AlkB 0.34 ABIE40_RS19515 ATP-dependent helicase HrpB low > 107
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_00009 alkylated DNA repair protein AlkB 0.34 CCNA_01243 ATP-dependent helicase hrpB low > 67
Caulobacter crescentus NA1000 0.31 CCNA_00009 alkylated DNA repair protein AlkB 0.34 CCNA_01243 ATP-dependent helicase hrpB low > 66
Dinoroseobacter shibae DFL-12 0.31 Dshi_3572 2OG-Fe(II) oxygenase (RefSeq) 0.33 Dshi_2580 ATP-dependent helicase HrpB (RefSeq) low > 64
Bosea sp. OAE506 0.31 ABIE41_RS00230 alpha-ketoglutarate-dependent dioxygenase AlkB 0.34 ABIE41_RS03925 ATP-dependent helicase HrpB low > 77
Sinorhizobium meliloti 1021 0.29 SMc02566 alkylated DNA repair protein 0.35 SMc02586 ATP-dependent helicase low > 103

Not shown: 12 genomes with orthologs for GFF1826 only; 22 genomes with orthologs for GFF84 only