Conservation of cofitness between GFF5234 and GFF5235 in Variovorax sp. SCN45

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Variovorax sp. SCN45 1.0 GFF5234 General secretion pathway protein E / Type II secretion cytoplasmic ATP binding protein (PulE, ATPase) 1.0 GFF5235 General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) 0.57 1
Variovorax sp. OAS795 0.93 ABID97_RS06945 ATPase, T2SS/T4P/T4SS family 0.79 ABID97_RS06950 type II secretion system secretin GspD low > 91
Acidovorax sp. GW101-3H11 0.78 Ac3H11_2029 General secretion pathway protein E / Type II secretion cytoplasmic ATP binding protein (PulE, ATPase) 0.50 Ac3H11_2030 General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) 0.93 1
Hydrogenophaga sp. GW460-11-11-14-LB1 0.75 GFF1391 General secretion pathway protein E 0.49 GFF1390 General secretion pathway protein D low > 90
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS29515 type II secretion system ATPase GspE 0.33 QEN71_RS29510 type II secretion system secretin GspD 0.68 1
Paraburkholderia bryophila 376MFSha3.1 0.64 H281DRAFT_02355 type II secretion system protein E (GspE) 0.16 H281DRAFT_02356 general secretion pathway protein D 0.87 1
Ralstonia solanacearum UW163 0.62 UW163_RS05880 type II secretion system protein GspE 0.37 UW163_RS05885 type II secretion system protein GspD — —
Ralstonia solanacearum GMI1000 0.62 RS_RS15645 type II secretion system protein GspE 0.37 RS_RS15640 type II secretion system protein GspD 0.85 2
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS07745 type II secretion system protein GspE 0.37 RALBFv3_RS07740 type II secretion system protein GspD 0.98 2
Ralstonia solanacearum PSI07 0.62 RPSI07_RS09515 type II secretion system protein GspE 0.37 RPSI07_RS09520 type II secretion system protein GspD 0.92 2
Ralstonia sp. UNC404CL21Col 0.62 ABZR87_RS03455 type II secretion system ATPase GspE 0.37 ABZR87_RS03450 type II secretion system secretin GspD 0.98 1
Cupriavidus basilensis FW507-4G11 0.61 RR42_RS19525 general secretion pathway protein GspE 0.38 RR42_RS19520 general secretion pathway protein GspD 0.94 1
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_0690 general secretory pathway protein E 0.11 B158DRAFT_0689 general secretion pathway protein D 0.93 1
Shewanella loihica PV-4 0.54 Shew_3618 general secretory pathway protein E (RefSeq) 0.18 Shew_3619 general secretion pathway protein D (RefSeq) 0.86 1
Shewanella oneidensis MR-1 0.54 SO0167 gspE general secretion pathway protein E (NCBI ptt file) 0.17 SO0166 gspD general secretion pathway protein D (NCBI ptt file) 0.98 1
Shewanella amazonensis SB2B 0.54 Sama_0170 general secretion pathway protein E (RefSeq) 0.19 Sama_0169 type II and III secretion system protein (RefSeq) 0.89 1
Shewanella sp. ANA-3 0.54 Shewana3_0152 type II secretion system protein E (GspE) (RefSeq) 0.17 Shewana3_0151 general secretion pathway protein D (RefSeq) 0.98 2
Vibrio cholerae E7946 ATCC 55056 0.54 CSW01_13785 type II secretion system protein GspE 0.17 CSW01_13790 type II secretion system protein GspD — —
Dickeya dianthicola ME23 0.52 DZA65_RS15675 type II secretion system ATPase GspE 0.13 DZA65_RS16270 type II secretion system secretin GspD low > 75
Dickeya dianthicola 67-19 0.52 HGI48_RS14730 type II secretion system ATPase GspE 0.13 HGI48_RS15450 type II secretion system secretin GspD low > 71
Dickeya dadantii 3937 0.52 DDA3937_RS14795 type II secretion system ATPase GspE 0.13 DDA3937_RS12700 type II secretion system secretin GspD low > 74
Klebsiella michiganensis M5al 0.51 BWI76_RS05085 general secretion pathway protein GspE 0.15 BWI76_RS05090 type II secretion system protein GspD 0.26 18
Marinobacter adhaerens HP15 0.51 HP15_1602 type II secretion system protein E 0.21 HP15_2355 type II and III secretion system protein 0.87 1
Pseudomonas stutzeri RCH2 0.51 Psest_4202 general secretory pathway protein E 0.18 Psest_2577 general secretion pathway protein D low > 67
Escherichia coli ECRC102 0.50 NIAGMN_28600 gspE type II secretion system ATPase GspE 0.15 NIAGMN_28605 etpD variant type II secretion system secretin EtpD — —
Escherichia coli ECRC98 0.50 JDDGAC_30300 gspE type II secretion system ATPase GspE 0.15 JDDGAC_30295 etpD variant type II secretion system secretin EtpD low > 86
Escherichia coli ECRC101 0.50 MCAODC_15270 gspE type II secretion system ATPase GspE 0.15 MCAODC_15265 etpD variant type II secretion system secretin EtpD low > 87
Escherichia coli ECRC100 0.50 OKFHMN_00280 gspE type II secretion system ATPase GspE 0.15 OKFHMN_00285 etpD variant type II secretion system secretin EtpD low > 80
Pseudomonas fluorescens FW300-N2E3 0.50 AO353_12550 type II secretion system protein GspE 0.17 AO353_12545 type II secretion system protein GspD low > 101
Pectobacterium carotovorum WPP14 0.50 HER17_RS06690 type II secretion system ATPase GspE 0.15 HER17_RS06685 type II secretion system secretin GspD low > 75
Rahnella sp. WP5 0.50 EX31_RS16170 type II secretion system ATPase GspE 0.17 EX31_RS16165 type II secretion system secretin GspD low > 89
Escherichia fergusonii Becca 0.49 EFB2_00846 Type II secretion system protein E 0.18 EFB2_00845 Secretin GspD 2 low > 86
Escherichia coli BL21 0.49 ECD_02837 putative type II secretion protein GspE 0.18 ECD_02838 putative type II secretion protein GspD 0.97 3
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_00377 Putative type II secretion system protein E 0.18 OHPLBJKB_00739 Type II secretion system protein D low > 73
Escherichia coli ECOR38 0.49 HEPCGN_18055 gspE general secretion pathway protein E 0.18 HEPCGN_18050 gspD general secretion pathway protein D 0.98 1
Escherichia coli BW25113 0.49 b3326 gspE general secretory pathway component, cryptic (NCBI) 0.18 b3325 yheF putative general protein secretion protein (VIMSS) 0.29 6
Escherichia coli ECOR27 0.49 NOLOHH_10980 gspE general secretion pathway protein E 0.18 NOLOHH_10975 gspD general secretion pathway protein D low > 75
Pseudomonas fluorescens GW456-L13 0.49 PfGW456L13_265 General secretion pathway protein E 0.18 PfGW456L13_266 General secretion pathway protein D low > 87
Escherichia coli Nissle 1917 0.49 ECOLIN_RS19065 type II secretion system ATPase GspE 0.18 ECOLIN_RS17085 type II secretion system secretin GspD low > 55
Pseudomonas sp. S08-1 0.49 OH686_04390 type II secretion system protein E 0.21 OH686_11840 type II secretion system protein D low > 80
Enterobacter sp. TBS_079 0.48 MPMX20_01516 Putative type II secretion system protein E 0.16 MPMX20_01515 Putative secretin GspD low > 85
Enterobacter asburiae PDN3 0.48 EX28DRAFT_2078 type II secretion system protein E 0.17 EX28DRAFT_2079 type II secretion system protein D low > 76
Erwinia tracheiphila SCR3 0.47 LU632_RS25235 gspE type II secretion system ATPase GspE 0.16 LU632_RS25230 gspD type II secretion system secretin GspD 0.55 4

Not shown: 2 genomes with orthologs for GFF5234 only; 6 genomes with orthologs for GFF5235 only