Conservation of cofitness between GFF7272 and GFF5193 in Variovorax sp. SCN45

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Variovorax sp. SCN45 1.0 GFF7272 D-glucarate permease 1.0 GFF5193 Galactofuranose ABC transporter, substrate-binding protein 0.55 3
Rahnella sp. WP5 0.54 EX31_RS03160 MFS transporter 0.47 EX31_RS14950 ABC transporter substrate-binding protein 0.27 88
Escherichia coli BL21 0.53 ECD_02634 putative D-glucarate transporter 0.47 ECD_04096 galactofuranose ABC transporter periplasmic binding protein low > 61
Escherichia coli ECOR38 0.53 HEPCGN_19475 gudP galactarate/glucarate/glycerate transporter GudP 0.47 HEPCGN_10170 ytfQ galactofuranose ABC transporter substrate-binding protein YtfQ low > 87
Escherichia coli ECRC62 0.53 BNILDI_10605 gudP galactarate/glucarate/glycerate transporter GudP 0.47 BNILDI_07285 ytfQ galactofuranose ABC transporter substrate-binding protein YtfQ low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.53 OHPLBJKB_00942 putative glucarate transporter 0.47 OHPLBJKB_03807 ABC transporter periplasmic-binding protein YtfQ low > 73
Escherichia coli ECOR27 0.53 NOLOHH_12100 gudP galactarate/glucarate/glycerate transporter GudP 0.47 NOLOHH_04230 ytfQ galactofuranose ABC transporter substrate-binding protein YtfQ low > 75
Escherichia fergusonii Becca 0.53 EFB2_01128 putative glucarate transporter 0.47 EFB2_04305 ABC transporter periplasmic-binding protein YtfQ low > 86
Escherichia coli BW25113 0.53 b2789 gudP predicted D-glucarate transporter (NCBI) 0.47 b4227 ytfQ predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) low > 76
Escherichia coli ECRC100 0.53 OKFHMN_20220 gudP galactarate/glucarate/glycerate transporter GudP 0.47 OKFHMN_11970 ytfQ galactofuranose ABC transporter substrate-binding protein YtfQ low > 80
Escherichia coli ECRC99 0.53 KEDOAH_07910 gudP galactarate/glucarate/glycerate transporter GudP 0.47 KEDOAH_16185 ytfQ galactofuranose ABC transporter substrate-binding protein YtfQ — —
Escherichia coli ECRC101 0.53 MCAODC_10745 gudP galactarate/glucarate/glycerate transporter GudP 0.47 MCAODC_02485 ytfQ galactofuranose ABC transporter substrate-binding protein YtfQ low > 87
Escherichia coli ECRC102 0.53 NIAGMN_17990 gudP galactarate/glucarate/glycerate transporter GudP 0.47 NIAGMN_09820 ytfQ galactofuranose ABC transporter substrate-binding protein YtfQ — —
Escherichia coli ECRC98 0.53 JDDGAC_23885 gudP galactarate/glucarate/glycerate transporter GudP 0.47 JDDGAC_15610 ytfQ galactofuranose ABC transporter substrate-binding protein YtfQ low > 86
Escherichia coli Nissle 1917 0.53 ECOLIN_RS15540 galactarate/glucarate/glycerate transporter GudP 0.47 ECOLIN_RS24535 galactofuranose ABC transporter substrate-binding protein YtfQ low > 55
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS15805 glucarate transporter 0.79 HSERO_RS05170 LacI family transcription regulator low > 78
Klebsiella michiganensis M5al 0.53 BWI76_RS22835 MFS transporter 0.47 BWI76_RS02795 periplasmic binding protein/LacI transcriptional regulator low > 92
Pseudomonas putida KT2440 0.53 PP_3600 glucarate transporter 0.09 PP_2372 putative Periplasmic sugar-binding protein low > 96
Pectobacterium carotovorum WPP14 0.53 HER17_RS04075 MFS transporter 0.47 HER17_RS01020 ABC transporter substrate-binding protein low > 75
Enterobacter asburiae PDN3 0.52 EX28DRAFT_2870 D-galactonate transporter 0.47 EX28DRAFT_3413 ABC-type sugar transport system, periplasmic component low > 76
Enterobacter sp. TBS_079 0.52 MPMX20_03659 putative glucarate transporter 0.47 MPMX20_00508 ABC transporter periplasmic-binding protein YtfQ low > 85
Pseudomonas fluorescens SBW25 0.51 PFLU_RS04245 MFS transporter 0.18 PFLU_RS12620 sugar ABC transporter substrate-binding protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.51 PFLU_RS04245 MFS transporter 0.18 PFLU_RS12620 sugar ABC transporter substrate-binding protein low > 109
Pseudomonas fluorescens FW300-N2E2 0.51 Pf6N2E2_3297 D-galactarate permease 0.18 Pf6N2E2_522 Inositol transport system sugar-binding protein low > 103
Pseudomonas fluorescens FW300-N2C3 0.51 AO356_07175 glucarate transporter 0.18 AO356_23200 rhizopine-binding protein low > 104
Erwinia tracheiphila SCR3 0.51 LU632_RS06310 MFS transporter 0.41 LU632_RS12380 ABC transporter substrate-binding protein low > 74
Pseudomonas sp. RS175 0.51 PFR28_00144 putative glucarate transporter 0.18 PFR28_02417 Xylitol-binding protein low > 88
Pseudomonas fluorescens FW300-N2E3 0.51 AO353_05295 glucarate transporter 0.18 AO353_21380 rhizopine-binding protein low > 101
Paraburkholderia bryophila 376MFSha3.1 0.51 H281DRAFT_05318 MFS transporter, ACS family, glucarate transporter 0.71 H281DRAFT_05269 monosaccharide ABC transporter substrate-binding protein, CUT2 family low > 103
Pseudomonas simiae WCS417 0.51 PS417_04205 D-galacturonate transporter (MFS superfamily) (from data) 0.18 PS417_11885 Inositol transport system sugar-binding protein (from data) low > 88
Ralstonia solanacearum PSI07 0.51 RPSI07_RS03475 MFS transporter 0.17 RPSI07_RS17915 rhizopine-binding protein low > 81
Ralstonia solanacearum IBSBF1503 0.51 RALBFv3_RS19740 MFS transporter 0.16 RALBFv3_RS15440 rhizopine-binding protein 0.27 76
Ralstonia solanacearum UW163 0.51 UW163_RS19435 MFS transporter 0.16 UW163_RS12900 rhizopine-binding protein — —
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS24150 glucarate transporter 0.71 BPHYT_RS23870 LacI family transcription regulator low > 109
Pseudomonas syringae pv. syringae B728a 0.50 Psyr_4226 D-galactonate transporter 0.18 Psyr_3265 monosaccharide ABC transporter substrate-binding protein, CUT2 family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.50 Psyr_4226 D-galactonate transporter 0.18 Psyr_3265 monosaccharide ABC transporter substrate-binding protein, CUT2 family low > 86
Paraburkholderia graminis OAS925 0.50 ABIE53_006507 ACS family glucarate transporter-like MFS transporter 0.72 ABIE53_006560 ABC-type sugar transport system substrate-binding protein low > 113
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS20330 MFS transporter 0.81 ABZR87_RS18345 ABC transporter substrate-binding protein low > 80
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS33565 MFS transporter 0.71 QEN71_RS09120 ABC transporter substrate-binding protein low > 153
Dickeya dadantii 3937 0.50 DDA3937_RS17055 MFS transporter 0.49 DDA3937_RS16305 ABC transporter substrate-binding protein low > 74
Dickeya dianthicola 67-19 0.50 HGI48_RS17110 MFS transporter 0.48 HGI48_RS16400 ABC transporter substrate-binding protein low > 71
Dickeya dianthicola ME23 0.50 DZA65_RS18185 MFS transporter 0.49 DZA65_RS17490 ABC transporter substrate-binding protein low > 75
Pseudomonas fluorescens FW300-N1B4 0.50 Pf1N1B4_1108 D-galactarate permease 0.17 Pf1N1B4_4285 Inositol transport system sugar-binding protein low > 87
Azospirillum sp. SherDot2 0.49 MPMX19_02893 putative glucarate transporter 0.53 MPMX19_06218 ABC transporter periplasmic-binding protein YtfQ low > 112
Pantoea sp. MT58 0.49 IAI47_04080 MFS transporter 0.49 IAI47_10425 ABC transporter substrate-binding protein low > 76
Serratia liquefaciens MT49 0.34 IAI46_16925 MFS transporter 0.46 IAI46_24405 ABC transporter substrate-binding protein low > 86
Azospirillum brasilense Sp245 0.13 AZOBR_RS23835 hexuronate transporter ExuT 0.52 AZOBR_RS31215 sugar ABC transporter substrate-binding protein low > 97

Not shown: 15 genomes with orthologs for GFF7272 only; 9 genomes with orthologs for GFF5193 only