Conservation of cofitness between PS417_12555 and PS417_26005 in Pseudomonas simiae WCS417

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_12555 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) 1.0 PS417_26005 biotin synthase 0.37 5
Pseudomonas fluorescens SBW25 0.95 PFLU_RS13240 D-glycerate dehydrogenase 0.99 PFLU_RS27650 biotin synthase BioB low > 109
Pseudomonas fluorescens SBW25-INTG 0.95 PFLU_RS13240 D-glycerate dehydrogenase 0.99 PFLU_RS27650 biotin synthase BioB 0.18 45
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_4763 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) 0.98 Pf1N1B4_2487 Biotin synthase (EC 2.8.1.6) low > 87
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_26885 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) 0.98 AO353_07525 biotin synthase 0.18 87
Pseudomonas fluorescens GW456-L13 0.84 PfGW456L13_2948 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) 0.98 PfGW456L13_1147 Biotin synthase (EC 2.8.1.6) low > 87
Pseudomonas sp. RS175 0.80 PFR28_01596 Glyoxylate/hydroxypyruvate reductase B 0.97 PFR28_04103 Biotin synthase low > 88
Pseudomonas fluorescens FW300-N2E2 0.79 Pf6N2E2_627 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) 0.97 Pf6N2E2_4759 Biotin synthase (EC 2.8.1.6) low > 103
Pseudomonas fluorescens FW300-N2C3 0.76 AO356_24675 bifunctional glyoxylate/hydroxypyruvate reductase B 0.98 AO356_14135 biotin synthase low > 104
Pseudomonas putida KT2440 0.68 PP_3376 putative phosphonate dehydrogenase 0.93 PP_0362 Biotin synthase 0.31 28
Herbaspirillum seropedicae SmR1 0.56 HSERO_RS07550 bifunctional glyoxylate/hydroxypyruvate reductase B 0.51 HSERO_RS12235 biotin synthase low > 78
Enterobacter sp. TBS_079 0.56 MPMX20_00177 Glyoxylate/hydroxypyruvate reductase B 0.65 MPMX20_01403 Biotin synthase low > 85
Klebsiella michiganensis M5al 0.54 BWI76_RS26960 bifunctional glyoxylate/hydroxypyruvate reductase B 0.66 BWI76_RS08760 biotin synthase low > 92
Escherichia coli Nissle 1917 0.54 ECOLIN_RS20330 glyoxylate/hydroxypyruvate reductase GhrB 0.66 ECOLIN_RS04130 biotin synthase BioB — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF458 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-) 0.65 GFF671 Biotin synthase (EC 2.8.1.6) low > 78
Escherichia coli ECRC101 0.54 OKFHMN_16020 ghrB glyoxylate/hydroxypyruvate reductase GhrB 0.66 OKFHMN_06400 bioB biotin synthase BioB — —
Escherichia coli ECRC62 0.54 BNILDI_03580 ghrB glyoxylate/hydroxypyruvate reductase GhrB 0.66 BNILDI_21040 bioB biotin synthase BioB — —
Escherichia coli ECRC99 0.54 KEDOAH_12130 ghrB glyoxylate/hydroxypyruvate reductase GhrB 0.66 KEDOAH_21510 bioB biotin synthase BioB — —
Escherichia fergusonii Becca 0.54 EFB2_00254 Glyoxylate/hydroxypyruvate reductase B 0.66 EFB2_03330 Biotin synthase low > 86
Escherichia coli ECRC102 0.54 NIAGMN_13780 ghrB glyoxylate/hydroxypyruvate reductase GhrB 0.66 NIAGMN_04445 bioB biotin synthase BioB — —
Escherichia coli ECRC101 0.54 MCAODC_06535 ghrB glyoxylate/hydroxypyruvate reductase GhrB 0.66 MCAODC_25615 bioB biotin synthase BioB — —
Escherichia coli BL21 0.54 ECD_03403 glyoxylate/hydroxypyruvate reductase B 0.66 ECD_00742 biotin synthase low > 60
Escherichia coli ECRC98 0.54 JDDGAC_19650 ghrB glyoxylate/hydroxypyruvate reductase GhrB 0.66 JDDGAC_10035 bioB biotin synthase BioB — —
Escherichia coli ECOR38 0.54 HEPCGN_14910 ghrB glyoxylate/hydroxypyruvate reductase GhrB 0.66 HEPCGN_01640 bioB biotin synthase BioB low > 85
Escherichia coli ECOR27 0.54 NOLOHH_07965 ghrB glyoxylate/hydroxypyruvate reductase GhrB 0.66 NOLOHH_22770 bioB biotin synthase BioB low > 57
Escherichia coli BW25113 0.54 b3553 yiaE putative dehydrogenase (VIMSS) 0.66 b0775 bioB biotin synthase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_00153 Glyoxylate/hydroxypyruvate reductase B 0.66 OHPLBJKB_02938 Biotin synthase low > 73
Enterobacter asburiae PDN3 0.52 EX28DRAFT_3817 Lactate dehydrogenase and related dehydrogenases 0.65 EX28DRAFT_2216 biotin synthase (EC 2.8.1.6) low > 76
Rahnella sp. WP5 0.52 EX31_RS05925 glyoxylate/hydroxypyruvate reductase GhrB 0.67 EX31_RS23695 biotin synthase BioB low > 89
Serratia liquefaciens MT49 0.52 IAI46_00085 glyoxylate/hydroxypyruvate reductase GhrB 0.67 IAI46_06525 biotin synthase BioB low > 86
Pectobacterium carotovorum WPP14 0.51 HER17_RS21175 glyoxylate/hydroxypyruvate reductase GhrB 0.66 HER17_RS13460 biotin synthase BioB low > 75
Pantoea sp. MT58 0.51 IAI47_00110 glyoxylate/hydroxypyruvate reductase GhrB 0.66 IAI47_13530 biotin synthase BioB low > 76
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS07265 D-glycerate dehydrogenase 0.58 QEN71_RS01085 biotin synthase BioB — —
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS09030 NAD(P)-dependent oxidoreductase 0.60 ABZR87_RS06265 biotin synthase BioB low > 80
Dickeya dianthicola 67-19 0.49 HGI48_RS00175 glyoxylate/hydroxypyruvate reductase GhrB 0.65 HGI48_RS08675 biotin synthase BioB low > 71
Dickeya dianthicola ME23 0.49 DZA65_RS00195 glyoxylate/hydroxypyruvate reductase GhrB 0.65 DZA65_RS08965 biotin synthase BioB low > 75
Castellaniella sp019104865 MT123 0.47 ABCV34_RS08615 D-glycerate dehydrogenase 0.54 ABCV34_RS15280 biotin synthase BioB low > 48
Variovorax sp. SCN45 0.46 GFF2715 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) 0.51 GFF937 Biotin synthase (EC 2.8.1.6) low > 127
Dickeya dadantii 3937 0.46 DDA3937_RS21080 glyoxylate/hydroxypyruvate reductase GhrB 0.66 DDA3937_RS08510 biotin synthase BioB low > 74
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS09465 bifunctional glyoxylate/hydroxypyruvate reductase B 0.57 RR42_RS00940 biotin synthase low > 128
Variovorax sp. OAS795 0.43 ABID97_RS20025 D-glycerate dehydrogenase 0.51 ABID97_RS13955 biotin synthase BioB low > 91
Ralstonia solanacearum GMI1000 0.41 RS_RS21645 D-glycerate dehydrogenase 0.60 RS_RS01305 biotin synthase low > 80
Ralstonia solanacearum PSI07 0.41 RPSI07_RS02805 D-glycerate dehydrogenase 0.59 RPSI07_RS22850 biotin synthase BioB low > 81
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF3835 Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-) 0.54 GFF3992 Biotin synthase (EC 2.8.1.6) low > 90
Acidovorax sp. GW101-3H11 0.38 Ac3H11_2599 Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-) 0.52 Ac3H11_2272 Biotin synthase (EC 2.8.1.6) low > 79
Ralstonia solanacearum UW163 0.33 UW163_RS11805 D-glycerate dehydrogenase 0.59 UW163_RS03115 biotin synthase BioB — —
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS14340 D-glycerate dehydrogenase 0.59 RALBFv3_RS10465 biotin synthase BioB low > 76
Rhizobium sp. OAE497 0.32 ABIE40_RS14685 D-glycerate dehydrogenase 0.55 ABIE40_RS21075 biotin synthase BioB low > 107
Parabacteroides merdae CL09T00C40 0.30 HMPREF1078_RS06255 2-hydroxyacid dehydrogenase family protein 0.27 HMPREF1078_RS15300 biotin synthase BioB low > 61

Not shown: 3 genomes with orthologs for PS417_12555 only; 43 genomes with orthologs for PS417_26005 only