Conservation of cofitness between GFF4333 and GFF4880 in Hydrogenophaga sp. GW460-11-11-14-LB1

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF4333 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) 1.0 GFF4880 Propionate--CoA ligase (EC 6.2.1.17) 0.65 5
Acidovorax sp. GW101-3H11 0.88 Ac3H11_2914 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) 0.78 Ac3H11_2208 Propionate--CoA ligase (EC 6.2.1.17) — —
Variovorax sp. SCN45 0.87 GFF232 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) 0.77 GFF978 Propionate--CoA ligase (EC 6.2.1.17) low > 127
Variovorax sp. OAS795 0.86 ABID97_RS16535 arginine/lysine/ornithine decarboxylase 0.76 ABID97_RS14140 propionate--CoA ligase low > 91
Herbaspirillum seropedicae SmR1 0.78 HSERO_RS17280 lysine decarboxylase 0.69 HSERO_RS15645 acetyl-CoA synthetase — —
Dechlorosoma suillum PS 0.74 Dsui_1245 arginine/lysine/ornithine decarboxylase 0.64 Dsui_2925 propionate--CoA ligase — —
Ralstonia solanacearum GMI1000 0.74 RS_RS11875 lysine decarboxylase 0.67 RS_RS07615 propionate--CoA ligase — —
Ralstonia solanacearum PSI07 0.74 RPSI07_RS13045 lysine decarboxylase 0.67 RPSI07_RS15240 propionate--CoA ligase — —
Ralstonia solanacearum IBSBF1503 0.74 RALBFv3_RS04325 lysine decarboxylase 0.66 RALBFv3_RS02205 propionate--CoA ligase — —
Ralstonia solanacearum UW163 0.74 UW163_RS09345 lysine decarboxylase 0.66 UW163_RS15515 propionate--CoA ligase — —
Ralstonia sp. UNC404CL21Col 0.74 ABZR87_RS16180 arginine/lysine/ornithine decarboxylase 0.66 ABZR87_RS14155 propionate--CoA ligase low > 80
Cupriavidus basilensis FW507-4G11 0.74 RR42_RS15940 lysine decarboxylase 0.67 RR42_RS13560 propionyl-CoA synthetase — —
Castellaniella sp019104865 MT123 0.73 ABCV34_RS08900 arginine/lysine/ornithine decarboxylase 0.63 ABCV34_RS00670 propionate--CoA ligase — —
Paraburkholderia graminis OAS925 0.73 ABIE53_001270 arginine decarboxylase 0.64 ABIE53_002938 propionyl-CoA synthetase — —
Paraburkholderia bryophila 376MFSha3.1 0.73 H281DRAFT_00160 ornithine decarboxylase 0.64 H281DRAFT_04471 propionyl-CoA synthetase — —
Paraburkholderia sabiae LMG 24235 0.73 QEN71_RS25000 arginine/lysine/ornithine decarboxylase 0.64 QEN71_RS05120 propionate--CoA ligase — —
Burkholderia phytofirmans PsJN 0.72 BPHYT_RS04980 lysine decarboxylase 0.63 BPHYT_RS13830 acetyl-CoA synthetase — —
Rhizobium sp. OAE497 0.46 ABIE40_RS23760 Orn/Lys/Arg decarboxylase N-terminal domain-containing protein 0.40 ABIE40_RS19175 propionyl-CoA synthetase low > 107
Sinorhizobium meliloti 1021 0.46 SMa0682 decarboxylase (lysine, ornithine, arginine) 0.40 SMc04095 acyl-COA synthetase low > 103
Pseudomonas putida KT2440 0.42 PP_4140 lysine decarboxylase 0.41 PP_2351 propionyl-CoA synthetase low > 96
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF1473 Arginine decarboxylase, catabolic (EC 4.1.1.19) 0.65 GFF4266 Propionate--CoA ligase (EC 6.2.1.17) low > 78
Escherichia fergusonii Becca 0.32 EFB2_04465 Biodegradative arginine decarboxylase 0.62 EFB2_03703 Acetyl-coenzyme A synthetase low > 86
Escherichia coli ECRC101 0.32 MCAODC_03060 adiA arginine decarboxylase 0.63 MCAODC_28115 prpE propionate--CoA ligase — —
Escherichia coli ECRC102 0.32 NIAGMN_10395 adiA arginine decarboxylase 0.63 NIAGMN_06940 prpE propionate--CoA ligase — —
Escherichia coli ECRC98 0.32 JDDGAC_16185 adiA arginine decarboxylase 0.63 JDDGAC_12540 prpE propionate--CoA ligase — —
Escherichia coli ECOR38 0.32 HEPCGN_11185 adiA arginine decarboxylase 0.63 HEPCGN_07470 prpE propionate--CoA ligase low > 85
Escherichia coli ECRC99 0.32 KEDOAH_15615 adiA arginine decarboxylase 0.63 KEDOAH_19080 prpE propionate--CoA ligase — —
Escherichia coli ECRC101 0.32 OKFHMN_12550 adiA arginine decarboxylase 0.63 OKFHMN_08885 prpE propionate--CoA ligase — —
Escherichia coli BW25113 0.32 b4117 adiA biodegradative arginine decarboxylase (RefSeq) 0.63 b0335 prpE predicted propionyl-CoA synthetase with ATPase domain (NCBI) low > 76
Escherichia coli ECRC62 0.32 BNILDI_06675 adiA arginine decarboxylase 0.62 BNILDI_23175 prpE propionate--CoA ligase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_03927 Biodegradative arginine decarboxylase 0.62 OHPLBJKB_03336 Acetyl-coenzyme A synthetase low > 73
Escherichia coli ECOR27 0.32 NOLOHH_04815 adiA arginine decarboxylase 0.63 NOLOHH_01760 prpE propionate--CoA ligase low > 57
Escherichia coli BL21 0.32 ECD_04002 lysine decarboxylase, acid-inducible 0.63 ECD_00289 propionate--CoA ligase low > 60
Escherichia coli Nissle 1917 0.32 ECOLIN_RS23825 arginine decarboxylase 0.63 ECOLIN_RS02165 propionate--CoA ligase low > 52
Vibrio cholerae E7946 ATCC 55056 0.32 CSW01_01445 lysine decarboxylase 0.40 CSW01_06755 acetate--CoA ligase low > 62
Rhodopseudomonas palustris CGA009 0.29 TX73_010575 Orn/Lys/Arg decarboxylase N-terminal domain-containing protein 0.42 TX73_023385 propionyl-CoA synthetase low > 86
Magnetospirillum magneticum AMB-1 0.29 AMB_RS05630 amino acid decarboxylase 0.42 AMB_RS11645 propionyl-CoA synthetase low > 64
Azospirillum sp. SherDot2 0.29 MPMX19_05197 Inducible ornithine decarboxylase 0.44 MPMX19_01753 Acetyl-coenzyme A synthetase low > 112
Azospirillum brasilense Sp245 0.29 AZOBR_RS27535 amino acid decarboxylase 0.43 AZOBR_RS06340 acyl-CoA synthetase low > 97
Shewanella amazonensis SB2B 0.22 Sama_3334 ornithine decarboxylase (RefSeq) 0.41 Sama_1364 acyl-coenzyme A synthetase/AMP-(fatty) acid ligase (RefSeq) low > 62
Shewanella sp. ANA-3 0.22 Shewana3_3871 ornithine decarboxylase (RefSeq) 0.40 Shewana3_1675 AMP-dependent synthetase and ligase (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.15 MIT1002_02902 Arginine decarboxylase 0.43 MIT1002_01463 Acetyl-coenzyme A synthetase low > 70

Not shown: 21 genomes with orthologs for GFF4333 only; 11 genomes with orthologs for GFF4880 only