Conservation of cofitness between PS417_26370 and PS417_24335 in Pseudomonas simiae WCS417

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_26370 RNA helicase 1.0 PS417_24335 50S rRNA methyltransferase 0.44 6
Pseudomonas fluorescens SBW25 1.00 PFLU_RS28020 ATP-dependent RNA helicase DbpA 0.92 PFLU_RS26260 class I SAM-dependent methyltransferase low > 109
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS28020 ATP-dependent RNA helicase DbpA 0.92 PFLU_RS26260 class I SAM-dependent methyltransferase low > 109
Pseudomonas fluorescens FW300-N2C3 0.95 AO356_13770 ATP-dependent RNA helicase 0.86 AO356_15650 50S rRNA methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.95 Pf6N2E2_4673 ATP-dependent 23S rRNA helicase DbpA 0.86 Pf6N2E2_5071 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) low > 103
Pseudomonas sp. RS175 0.94 PFR28_04172 ATP-dependent RNA helicase DbpA 0.86 PFR28_03798 Ribosomal RNA large subunit methyltransferase G low > 88
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_2412 ATP-dependent 23S rRNA helicase DbpA 0.88 Pf1N1B4_2763 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) low > 87
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_1078 ATP-dependent 23S rRNA helicase DbpA 0.90 PfGW456L13_1438 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) low > 87
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_07850 ATP-dependent RNA helicase 0.86 AO353_13950 50S rRNA methyltransferase low > 101
Pseudomonas syringae pv. syringae B728a 0.88 Psyr_0516 ATP-dependent RNA helicase DbpA 0.80 Psyr_4279 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.88 Psyr_0516 ATP-dependent RNA helicase DbpA 0.80 Psyr_4279 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase low > 86
Pseudomonas putida KT2440 0.85 PP_4952 ATP-dependent RNA helicase, specific for 23S rRNA 0.80 PP_4648 Ribosomal RNA large subunit methyltransferase G low > 96
Pseudomonas stutzeri RCH2 0.84 Psest_0344 Superfamily II DNA and RNA helicases 0.72 Psest_3440 16S RNA G1207 methylase RsmC low > 67
Pseudomonas sp. S08-1 0.74 OH686_14770 ATP-dependent 23S rRNA helicase DbpA 0.74 OH686_16135 23S rRNA (guanine(1835)-N(2))-methyltransferase low > 80
Marinobacter adhaerens HP15 0.59 HP15_1329 DEAD/DEAH box helicase domain protein 0.25 HP15_2265 rRNA (guanine-N2-)-methyltransferase, RsmD low > 73
Serratia liquefaciens MT49 0.58 IAI46_14765 ATP-dependent RNA helicase DbpA 0.37 IAI46_22185 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 86
Pectobacterium carotovorum WPP14 0.57 HER17_RS06775 ATP-dependent RNA helicase DbpA 0.37 HER17_RS18680 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 75
Rahnella sp. WP5 0.55 EX31_RS24740 ATP-dependent RNA helicase DbpA 0.33 EX31_RS08350 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 89
Shewanella amazonensis SB2B 0.53 Sama_0752 ATP-dependent RNA helicase DbpA (RefSeq) 0.33 Sama_2548 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) low > 62
Klebsiella michiganensis M5al 0.53 BWI76_RS12705 ATP-dependent RNA helicase 0.34 BWI76_RS24680 23S rRNA (guanine(1835)-N(2))-methyltransferase low > 92
Shewanella sp. ANA-3 0.53 Shewana3_3384 ATP-dependent RNA helicase DbpA (RefSeq) 0.31 Shewana3_0932 methyltransferase small (RefSeq) low > 73
Dickeya dadantii 3937 0.53 DDA3937_RS11045 ATP-dependent RNA helicase DbpA 0.34 DDA3937_RS02850 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 74
Shewanella oneidensis MR-1 0.53 SO0897 dbpA ATP-dependent RNA helicase DbpA (NCBI ptt file) 0.30 SO1097 conserved hypothetical protein (NCBI ptt file) low > 76
Dickeya dianthicola 67-19 0.53 HGI48_RS11065 ATP-dependent RNA helicase DbpA 0.33 HGI48_RS02825 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 71
Dickeya dianthicola ME23 0.53 DZA65_RS11470 ATP-dependent RNA helicase DbpA 0.34 DZA65_RS03000 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 75
Enterobacter asburiae PDN3 0.53 EX28DRAFT_1006 Superfamily II DNA and RNA helicases 0.35 EX28DRAFT_3153 16S RNA G1207 methylase RsmC low > 76
Shewanella loihica PV-4 0.53 Shew_0598 ATP-dependent RNA helicase DbpA (RefSeq) 0.30 Shew_2886 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) low > 60
Escherichia coli Nissle 1917 0.53 ECOLIN_RS08060 ATP-dependent RNA helicase DbpA 0.36 ECOLIN_RS17790 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli ECRC62 0.52 BNILDI_18025 dbpA ATP-dependent RNA helicase DbpA 0.35 BNILDI_01155 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Enterobacter sp. TBS_079 0.52 MPMX20_02441 ATP-dependent RNA helicase DbpA 0.35 MPMX20_03995 Ribosomal RNA large subunit methyltransferase G low > 85
Escherichia coli ECOR27 0.52 NOLOHH_19875 dbpA ATP-dependent RNA helicase DbpA 0.36 NOLOHH_10360 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli ECOR38 0.52 HEPCGN_26000 dbpA ATP-dependent RNA helicase DbpA 0.35 HEPCGN_17415 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 85
Escherichia fergusonii Becca 0.52 EFB2_02584 ATP-dependent RNA helicase DbpA 0.36 EFB2_00728 Ribosomal RNA large subunit methyltransferase G low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF2649 ATP-dependent 23S rRNA helicase DbpA 0.36 GFF3186 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) low > 78
Escherichia coli BW25113 0.52 b1343 dbpA ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) 0.35 b3084 ygjO putative enzyme (VIMSS) low > 76
Escherichia coli BL21 0.52 ECD_01320 ATP-dependent RNA helicase, specific for 23S rRNA 0.35 ECD_02953 23S rRNA m(2)G1835 methyltransferase, SAM-dependent low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_02338 ATP-dependent RNA helicase DbpA 0.35 OHPLBJKB_00618 Ribosomal RNA large subunit methyltransferase G low > 73
Escherichia coli ECRC102 0.52 NIAGMN_26330 dbpA ATP-dependent RNA helicase DbpA 0.36 NIAGMN_16325 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli ECRC101 0.52 OKFHMN_02160 dbpA ATP-dependent RNA helicase DbpA 0.36 OKFHMN_18560 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli ECRC98 0.52 JDDGAC_04720 dbpA ATP-dependent RNA helicase DbpA 0.36 JDDGAC_22195 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli ECRC99 0.52 KEDOAH_26595 dbpA ATP-dependent RNA helicase DbpA 0.36 KEDOAH_09585 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli ECRC101 0.52 MCAODC_16095 dbpA ATP-dependent RNA helicase DbpA 0.36 MCAODC_09075 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_12980 ATP-dependent RNA helicase DbpA 0.33 CSW01_11685 ribosomal RNA large subunit methyltransferase G low > 62
Pantoea sp. MT58 0.50 IAI47_15055 ATP-dependent RNA helicase DbpA 0.34 IAI47_02950 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 76
Erwinia tracheiphila SCR3 0.50 LU632_RS11995 dbpA ATP-dependent RNA helicase DbpA 0.33 LU632_RS02335 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 74
Alteromonas macleodii MIT1002 0.43 MIT1002_03748 ATP-independent RNA helicase DbpA 0.32 MIT1002_00689 Ribosomal RNA large subunit methyltransferase G — —

Not shown: 22 genomes with orthologs for PS417_26370 only; 0 genomes with orthologs for PS417_24335 only