Conservation of cofitness between PS417_20930 and PS417_24335 in Pseudomonas simiae WCS417

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_20930 50S rRNA methyltransferase 1.0 PS417_24335 50S rRNA methyltransferase 0.39 16
Pseudomonas fluorescens SBW25 0.99 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.92 PFLU_RS26260 class I SAM-dependent methyltransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.92 PFLU_RS26260 class I SAM-dependent methyltransferase low > 109
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_02605 50S rRNA methyltransferase 0.86 AO356_15650 50S rRNA methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E3 0.93 AO353_00775 50S rRNA methyltransferase 0.86 AO353_13950 50S rRNA methyltransferase low > 101
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_2346 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) 0.86 Pf6N2E2_5071 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) low > 103
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_4094 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) 0.90 PfGW456L13_1438 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) low > 87
Pseudomonas sp. RS175 0.92 PFR28_01055 Ribosomal RNA large subunit methyltransferase K/L 0.86 PFR28_03798 Ribosomal RNA large subunit methyltransferase G low > 88
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_3844 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) 0.88 Pf1N1B4_2763 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) 0.29 9
Pseudomonas syringae pv. syringae B728a 0.88 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase 0.80 Psyr_4279 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.88 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase 0.80 Psyr_4279 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase low > 86
Pseudomonas putida KT2440 0.81 PP_2096 fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase 0.80 PP_4648 Ribosomal RNA large subunit methyltransferase G low > 96
Pseudomonas stutzeri RCH2 0.80 Psest_1949 Predicted N6-adenine-specific DNA methylase 0.72 Psest_3440 16S RNA G1207 methylase RsmC low > 67
Pseudomonas sp. S08-1 0.80 OH686_03110 23S rRNA (guanine(2445)-N(2))-methyltransferase / 23S rRNA (guanine(2069)-N(7))-methyltransferase 0.74 OH686_16135 23S rRNA (guanine(1835)-N(2))-methyltransferase low > 80
Marinobacter adhaerens HP15 0.45 HP15_1379 RNA methylase 0.25 HP15_2265 rRNA (guanine-N2-)-methyltransferase, RsmD low > 73
Vibrio cholerae E7946 ATCC 55056 0.39 CSW01_07480 ribosomal RNA large subunit methyltransferase K/L 0.33 CSW01_11685 ribosomal RNA large subunit methyltransferase G low > 62
Enterobacter asburiae PDN3 0.38 EX28DRAFT_1995 Predicted N6-adenine-specific DNA methylase 0.35 EX28DRAFT_3153 16S RNA G1207 methylase RsmC low > 76
Enterobacter sp. TBS_079 0.38 MPMX20_01599 Ribosomal RNA large subunit methyltransferase K/L 0.35 MPMX20_03995 Ribosomal RNA large subunit methyltransferase G low > 85
Dickeya dadantii 3937 0.38 DDA3937_RS12840 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.34 DDA3937_RS02850 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 74
Escherichia coli ECRC62 0.38 BNILDI_20000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.35 BNILDI_01155 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 75
Escherichia coli ECOR27 0.38 NOLOHH_21835 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.36 NOLOHH_10360 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.38 GFF3239 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) 0.36 GFF3186 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) low > 78
Klebsiella michiganensis M5al 0.38 BWI76_RS09925 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase 0.34 BWI76_RS24680 23S rRNA (guanine(1835)-N(2))-methyltransferase low > 92
Escherichia coli ECRC101 0.38 MCAODC_24670 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.36 MCAODC_09075 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 87
Escherichia coli ECRC99 0.38 KEDOAH_22455 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.36 KEDOAH_09585 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Dickeya dianthicola ME23 0.38 DZA65_RS13375 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.34 DZA65_RS03000 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 75
Escherichia coli ECRC100 0.38 OKFHMN_05280 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.36 OKFHMN_18560 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 80
Escherichia coli ECOR38 0.38 HEPCGN_23240 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.35 HEPCGN_17415 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 87
Escherichia coli ECRC102 0.38 NIAGMN_03000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.36 NIAGMN_16325 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Dickeya dianthicola 67-19 0.38 HGI48_RS12910 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.33 HGI48_RS02825 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 71
Escherichia coli HS(pFamp)R (ATCC 700891) 0.38 OHPLBJKB_02718 Ribosomal RNA large subunit methyltransferase K/L 0.35 OHPLBJKB_00618 Ribosomal RNA large subunit methyltransferase G low > 73
Shewanella amazonensis SB2B 0.38 Sama_1600 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) 0.33 Sama_2548 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) low > 62
Escherichia coli BW25113 0.38 b0948 ycbY predicted methyltransferase (NCBI) 0.35 b3084 ygjO putative enzyme (VIMSS) low > 76
Escherichia coli Nissle 1917 0.38 ECOLIN_RS04980 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.36 ECOLIN_RS17790 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia fergusonii Becca 0.38 EFB2_03123 Ribosomal RNA large subunit methyltransferase K/L 0.36 EFB2_00728 Ribosomal RNA large subunit methyltransferase G low > 86
Escherichia coli BL21 0.38 ECD_00952 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent 0.35 ECD_02953 23S rRNA m(2)G1835 methyltransferase, SAM-dependent low > 61
Pectobacterium carotovorum WPP14 0.38 HER17_RS11990 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.37 HER17_RS18680 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 75
Escherichia coli ECRC98 0.38 JDDGAC_08890 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.36 JDDGAC_22195 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 86
Shewanella loihica PV-4 0.38 Shew_1812 23S rRNA m(2)G2445 methyltransferase (RefSeq) 0.30 Shew_2886 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) 0.45 49
Erwinia tracheiphila SCR3 0.38 LU632_RS09965 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.33 LU632_RS02335 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 74
Serratia liquefaciens MT49 0.37 IAI46_08820 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.37 IAI46_22185 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 86
Shewanella oneidensis MR-1 0.37 SO1851 conserved hypothetical protein (NCBI ptt file) 0.30 SO1097 conserved hypothetical protein (NCBI ptt file) 0.36 58
Pantoea sp. MT58 0.37 IAI47_12690 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.34 IAI47_02950 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 76
Shewanella sp. ANA-3 0.37 Shewana3_1601 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) 0.31 Shewana3_0932 methyltransferase small (RefSeq) low > 73
Rahnella sp. WP5 0.37 EX31_RS18080 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.33 EX31_RS08350 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 89
Alteromonas macleodii MIT1002 0.35 MIT1002_02036 Ribosomal RNA large subunit methyltransferase K/L 0.32 MIT1002_00689 Ribosomal RNA large subunit methyltransferase G low > 70

Not shown: 8 genomes with orthologs for PS417_20930 only; 0 genomes with orthologs for PS417_24335 only