Conservation of cofitness between PS417_17550 and PS417_21065 in Pseudomonas simiae WCS417

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_17550 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) 1.0 PS417_21065 3-methylitaconate isomerase 0.39 6
Pseudomonas fluorescens SBW25 1.00 PFLU_RS19360 alpha-ketoacid dehydrogenase subunit beta 0.95 PFLU_RS22675 2-methylaconitate cis-trans isomerase PrpF low > 109
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS19360 alpha-ketoacid dehydrogenase subunit beta 0.95 PFLU_RS22675 2-methylaconitate cis-trans isomerase PrpF 0.35 25
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_26640 2-oxoisovalerate dehydrogenase 0.87 AO353_00885 3-methylitaconate isomerase 0.50 13
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_22985 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) 0.90 AO356_20880 3-methylitaconate isomerase 0.41 25
Pseudomonas sp. RS175 0.94 PFR28_02446 2-oxoisovalerate dehydrogenase subunit beta 0.90 PFR28_02924 2-methyl-aconitate isomerase 0.63 17
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_480 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (EC 1.2.4.4) (from data) 0.91 Pf6N2E2_6064 2-methylaconitate isomerase 0.51 17
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_4479 Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) 0.90 Pf1N1B4_3822 2-methylaconitate cis-trans isomerase
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_3541 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) 0.90 PfGW456L13_4115 2-methylaconitate cis-trans isomerase 0.90 5
Pseudomonas putida KT2440 0.89 PP_4402 branched-chain alpha-keto acid dehydrogenase complex, beta subunit 0.84 PP_2337 aconitate isomerase 0.29 26
Variovorax sp. OAS795 0.81 ABID97_RS06675 alpha-ketoacid dehydrogenase subunit beta 0.58 ABID97_RS19020 2-methylaconitate cis-trans isomerase PrpF low > 91
Castellaniella sp019104865 MT123 0.80 ABCV34_RS04970 alpha-ketoacid dehydrogenase subunit beta 0.22 ABCV34_RS02795 4-oxalomesaconate tautomerase low > 48
Agrobacterium fabrum C58 0.74 Atu3472 2-oxoisovalerate dehydrogenase subunit beta 0.23 Atu4263 hypothetical protein low > 89
Bosea sp. OAE506 0.74 ABIE41_RS02480 alpha-ketoacid dehydrogenase subunit beta 0.22 ABIE41_RS16535 4-oxalomesaconate tautomerase low > 77
Sinorhizobium meliloti 1021 0.74 SMc03202 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) 0.23 SMc00497 tramsmembrane protein low > 103
Sphingomonas koreensis DSMZ 15582 0.72 Ga0059261_2272 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 0.24 Ga0059261_0523 Uncharacterized protein conserved in bacteria low > 68
Alteromonas macleodii MIT1002 0.44 MIT1002_02013 2-oxoisovalerate dehydrogenase subunit beta 0.71 MIT1002_03132 3-methylitaconate isomerase
Shewanella loihica PV-4 0.44 Shew_1926 transketolase, central region (RefSeq) 0.73 Shew_1823 putative AcnD-accessory protein PrpF (RefSeq) low > 60
Shewanella sp. ANA-3 0.43 Shewana3_2130 transketolase, central region (RefSeq) 0.81 Shewana3_3828 methylitaconate delta2-delta3-isomerase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.43 Sama_1710 alpha keto acid dehydrogenase complex, E1 component, beta subunit (RefSeq) 0.73 Sama_3297 hypothetical protein (RefSeq) low > 62
Shewanella oneidensis MR-1 0.43 SO2340 alpha keto acid dehydrogenase complex, E1 component, beta subunit (NCBI ptt file) 0.81 SO0342 conserved hypothetical protein (NCBI ptt file) low > 76
Lysobacter sp. OAE881 0.41 ABIE51_RS04040 alpha-ketoacid dehydrogenase subunit beta 0.79 ABIE51_RS09485 2-methylaconitate cis-trans isomerase PrpF
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS18445 alpha-ketoacid dehydrogenase subunit beta 0.81 ABZR86_RS08430 2-methylaconitate cis-trans isomerase PrpF
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_1476 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 0.76 B158DRAFT_1346 2-methylaconitate cis-trans isomerase
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.570.1 Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) 0.78 Xcc-8004.3976.1 2-methylaconitate cis-trans isomerase 0.48 25
Ralstonia solanacearum PSI07 0.38 RPSI07_RS16525 alpha-ketoacid dehydrogenase subunit beta 0.83 RPSI07_RS00385 2-methylaconitate cis-trans isomerase PrpF low > 81
Ralstonia solanacearum IBSBF1503 0.38 RALBFv3_RS00945 alpha-ketoacid dehydrogenase subunit beta 0.81 RALBFv3_RS22835 2-methylaconitate cis-trans isomerase PrpF low > 76
Ralstonia solanacearum UW163 0.38 UW163_RS14255 alpha-ketoacid dehydrogenase subunit beta 0.81 UW163_RS23455 2-methylaconitate cis-trans isomerase PrpF
Ralstonia solanacearum GMI1000 0.37 RS_RS09075 alpha-ketoacid dehydrogenase subunit beta 0.83 RS_RS17725 2-methylaconitate cis-trans isomerase PrpF low > 80
Cupriavidus basilensis FW507-4G11 0.37 RR42_RS33050 2-oxoisovalerate dehydrogenase 0.87 RR42_RS11275 3-methylitaconate isomerase low > 128

Not shown: 5 genomes with orthologs for PS417_17550 only; 33 genomes with orthologs for PS417_21065 only