Conservation of cofitness between PS417_22115 and PS417_16570 in Pseudomonas simiae WCS417

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_22115 transcriptional regulator 1.0 PS417_16570 isocitrate lyase 0.21 15
Pseudomonas fluorescens SBW25 1.00 PFLU_RS23730 MurR/RpiR family transcriptional regulator 0.99 PFLU_RS18610 isocitrate lyase 0.49 80
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS23730 MurR/RpiR family transcriptional regulator 0.99 PFLU_RS18610 isocitrate lyase 0.24 75
Pseudomonas fluorescens GW456-L13 0.97 PfGW456L13_1900 Phosphogluconate repressor HexR, RpiR family 0.99 PfGW456L13_2633 Isocitrate lyase (EC 4.1.3.1) low > 87
Pseudomonas sp. RS175 0.96 PFR28_00572 HTH-type transcriptional regulator HexR 0.99 PFR28_02625 Isocitrate lyase low > 88
Pseudomonas fluorescens FW300-N2C3 0.96 AO356_05165 transcriptional regulator 0.99 AO356_22080 isocitrate lyase 0.40 21
Pseudomonas fluorescens FW300-N2E2 0.96 Pf6N2E2_2886 Phosphogluconate repressor HexR, RpiR family 0.98 Pf6N2E2_279 Isocitrate lyase (EC 4.1.3.1) 0.32 22
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_03365 transcriptional regulator 0.99 AO353_27735 isocitrate lyase low > 101
Pseudomonas fluorescens FW300-N1B4 0.95 Pf1N1B4_590 Phosphogluconate repressor HexR, RpiR family 0.99 Pf1N1B4_4042 Isocitrate lyase (EC 4.1.3.1) (from data) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.92 Psyr_1119 Helix-turn-helix protein RpiR:Sugar isomerase (SIS) 0.97 Psyr_3196 isocitrate lyase low > 86
Pseudomonas syringae pv. syringae B728a 0.92 Psyr_1119 Helix-turn-helix protein RpiR:Sugar isomerase (SIS) 0.97 Psyr_3196 isocitrate lyase 0.40 16
Pseudomonas putida KT2440 0.88 PP_1021 DNA-binding transcriptional regulator 0.97 PP_4116 isocitrate lyase 0.21 42
Pseudomonas stutzeri RCH2 0.88 Psest_0851 Transcriptional regulators 0.15 Psest_2014 Isocitrate lyase (EC 4.1.3.1) (from data) low > 67
Pseudomonas sp. S08-1 0.87 OH686_02440 Phosphogluconate repressor HexR, RpiR family 0.14 OH686_00170 Isocitrate lyase low > 80
Marinobacter adhaerens HP15 0.61 HP15_2180 transcriptional regulator, RpiR family protein 0.14 HP15_3234 isocitrate lyase low > 73
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_05825 transcriptional regulator HexR 0.78 CSW01_03830 isocitrate lyase low > 62
Shewanella amazonensis SB2B 0.57 Sama_1813 DNA-binding transcriptional regulator HexR (RefSeq) 0.78 Sama_2380 Isocitrate lyase (EC 4.1.3.1) (from data) low > 62
Shewanella oneidensis MR-1 0.56 SO2490 transcriptional regulator, RpiR family (NCBI ptt file) 0.78 SO1484 aceA Isocitrate lyase (EC 4.1.3.1) (from data) low > 76
Shewanella sp. ANA-3 0.56 Shewana3_2152 DNA-binding transcriptional regulator HexR (RefSeq) 0.78 Shewana3_2942 isocitrate lyase (RefSeq) low > 73
Klebsiella michiganensis M5al 0.55 BWI76_RS18110 transcriptional regulator HexR 0.72 BWI76_RS01665 Isocitrate lyase (EC 4.1.3.1) (from data) low > 92
Serratia liquefaciens MT49 0.55 IAI46_14580 MurR/RpiR family transcriptional regulator 0.72 IAI46_23190 isocitrate lyase low > 86
Shewanella loihica PV-4 0.55 Shew_2049 DNA-binding transcriptional regulator HexR (RefSeq) 0.78 Shew_1276 Isocitrate lyase (EC 4.1.3.1) (from data) low > 60
Escherichia coli ECRC101 0.55 OKFHMN_26325 hexR DNA-binding transcriptional regulator HexR 0.73 OKFHMN_13265 aceA isocitrate lyase — —
Escherichia fergusonii Becca 0.55 EFB2_02089 HTH-type transcriptional regulator HexR 0.72 EFB2_04595 Isocitrate lyase low > 86
Escherichia coli ECOR27 0.55 NOLOHH_16840 hexR DNA-binding transcriptional regulator HexR 0.72 NOLOHH_05410 aceA isocitrate lyase low > 57
Escherichia coli ECRC99 0.55 KEDOAH_01780 hexR DNA-binding transcriptional regulator HexR 0.73 KEDOAH_14895 aceA isocitrate lyase — —
Escherichia coli ECRC62 0.55 BNILDI_15635 hexR DNA-binding transcriptional regulator HexR 0.72 BNILDI_06110 aceA isocitrate lyase — —
Escherichia coli ECRC102 0.55 NIAGMN_01735 hexR DNA-binding transcriptional regulator HexR 0.73 NIAGMN_11015 aceA isocitrate lyase — —
Escherichia coli ECOR38 0.55 HEPCGN_04730 hexR DNA-binding transcriptional regulator HexR 0.72 HEPCGN_11905 aceA isocitrate lyase low > 85
Escherichia coli ECRC101 0.55 MCAODC_19080 hexR DNA-binding transcriptional regulator HexR 0.73 MCAODC_03765 aceA isocitrate lyase — —
Escherichia coli ECRC98 0.55 JDDGAC_00900 hexR DNA-binding transcriptional regulator HexR 0.73 JDDGAC_16890 aceA isocitrate lyase — —
Escherichia coli Nissle 1917 0.55 ECOLIN_RS10325 DNA-binding transcriptional regulator HexR 0.72 ECOLIN_RS26870 isocitrate lyase — —
Escherichia coli BW25113 0.55 b1853 yebK predicted DNA-binding transcriptional regulator (NCBI) 0.72 b4015 aceA isocitrate lyase (NCBI) 0.21 21
Escherichia coli BL21 0.55 ECD_01824 putative DNA-binding transcriptional regulator 0.72 ECD_03887 isocitrate lyase low > 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF1632 Phosphogluconate repressor HexR, RpiR family 0.72 GFF1352 Isocitrate lyase (EC 4.1.3.1) low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_01875 HTH-type transcriptional regulator HexR 0.72 OHPLBJKB_04035 Isocitrate lyase low > 73
Dickeya dianthicola 67-19 0.55 HGI48_RS10160 MurR/RpiR family transcriptional regulator 0.72 HGI48_RS19145 isocitrate lyase low > 71
Dickeya dianthicola ME23 0.55 DZA65_RS10575 MurR/RpiR family transcriptional regulator 0.72 DZA65_RS20265 isocitrate lyase low > 75
Dickeya dadantii 3937 0.55 DDA3937_RS10130 MurR/RpiR family transcriptional regulator 0.72 DDA3937_RS19055 isocitrate lyase low > 74
Pectobacterium carotovorum WPP14 0.55 HER17_RS11785 MurR/RpiR family transcriptional regulator 0.72 HER17_RS02295 isocitrate lyase low > 75
Rahnella sp. WP5 0.54 EX31_RS10635 MurR/RpiR family transcriptional regulator 0.72 EX31_RS11745 isocitrate lyase low > 89
Enterobacter asburiae PDN3 0.54 EX28DRAFT_0703 transcriptional regulator, RpiR family 0.72 EX28DRAFT_4329 isocitrate lyase low > 76
Enterobacter sp. TBS_079 0.54 MPMX20_02758 HTH-type transcriptional regulator HexR 0.72 MPMX20_00232 Isocitrate lyase low > 85
Pantoea sp. MT58 0.50 IAI47_08490 MurR/RpiR family transcriptional regulator 0.68 IAI47_18005 isocitrate lyase low > 76
Azospirillum sp. SherDot2 0.31 MPMX19_05117 HTH-type transcriptional regulator HexR 0.58 MPMX19_05830 Isocitrate lyase low > 112

Not shown: 2 genomes with orthologs for PS417_22115 only; 34 genomes with orthologs for PS417_16570 only