Conservation of cofitness between Psest_4191 and Psest_2651 in Pseudomonas stutzeri RCH2

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_4191 Transcriptional regulator 1.0 Psest_2651 DNA topoisomerase I, bacterial 0.33 3
Pseudomonas fluorescens FW300-N2E2 0.90 Pf6N2E2_4353 Hydrogen peroxide-inducible genes activator 0.89 Pf6N2E2_2287 DNA topoisomerase I (EC 5.99.1.2) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_0202 transcriptional regulator, LysR family 0.88 Psyr_3287 DNA topoisomerase I — —
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_0202 transcriptional regulator, LysR family 0.88 Psyr_3287 DNA topoisomerase I low > 86
Pseudomonas putida KT2440 0.88 PP_5309 oxidative and nitrosative stress transcriptional dual regulator 0.90 PP_2139 DNA topoisomerase I — —
Pseudomonas simiae WCS417 0.87 PS417_27865 LysR family transcriptional regulator 0.89 PS417_07590 DNA topoisomerase I — —
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_12385 LysR family transcriptional regulator 0.89 AO356_02315 DNA topoisomerase I low > 104
Pseudomonas fluorescens SBW25-INTG 0.87 PFLU_RS29545 hydrogen peroxide-inducible genes activator 0.89 PFLU_RS07665 type I DNA topoisomerase low > 109
Pseudomonas fluorescens SBW25 0.87 PFLU_RS29545 hydrogen peroxide-inducible genes activator 0.89 PFLU_RS07665 type I DNA topoisomerase low > 109
Pseudomonas sp. RS175 0.86 PFR28_04434 Hydrogen peroxide-inducible genes activator 0.90 PFR28_01113 DNA topoisomerase 1 low > 88
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_09315 LysR family transcriptional regulator 0.89 AO353_00495 DNA topoisomerase I low > 101
Pseudomonas sp. S08-1 0.86 OH686_13510 Hydrogen peroxide-inducible genes activator 0.90 OH686_21940 DNA topoisomerase I — —
Pseudomonas fluorescens GW456-L13 0.86 PfGW456L13_773 Hydrogen peroxide-inducible genes activator 0.89 PfGW456L13_4038 DNA topoisomerase I (EC 5.99.1.2) low > 87
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_2106 Hydrogen peroxide-inducible genes activator 0.89 Pf1N1B4_3906 DNA topoisomerase I (EC 5.99.1.2) low > 87
Marinobacter adhaerens HP15 0.64 HP15_308 oxidative stress regulatory protein OxyR 0.73 HP15_1514 DNA topoisomerase I — —
Kangiella aquimarina DSM 16071 0.53 B158DRAFT_0567 Transcriptional regulator 0.69 B158DRAFT_2227 DNA topoisomerase I, bacterial low > 40
Dickeya dianthicola ME23 0.37 DZA65_RS21450 DNA-binding transcriptional regulator OxyR 0.67 DZA65_RS11015 type I DNA topoisomerase — —
Dickeya dianthicola 67-19 0.37 HGI48_RS20405 DNA-binding transcriptional regulator OxyR 0.67 HGI48_RS10535 type I DNA topoisomerase — —
Escherichia fergusonii Becca 0.37 EFB2_04651 Hydrogen peroxide-inducible genes activator 0.69 EFB2_02653 DNA topoisomerase 1 low > 86
Escherichia coli ECRC102 0.37 NIAGMN_11315 oxyR DNA-binding transcriptional regulator OxyR 0.69 NIAGMN_26775 type I DNA topoisomerase — —
Escherichia coli BW25113 0.37 b3961 oxyR DNA-binding transcriptional dual regulator (NCBI) 0.69 b1274 topA DNA topoisomerase I (NCBI) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_04089 Hydrogen peroxide-inducible genes activator 0.69 OHPLBJKB_02410 DNA topoisomerase 1 low > 73
Escherichia coli Nissle 1917 0.37 ECOLIN_RS22870 DNA-binding transcriptional regulator OxyR 0.69 ECOLIN_RS07675 type I DNA topoisomerase — —
Escherichia coli ECRC62 0.37 BNILDI_05825 oxyR DNA-binding transcriptional regulator OxyR 0.69 BNILDI_18420 type I DNA topoisomerase — —
Escherichia coli ECRC99 0.37 KEDOAH_14595 oxyR DNA-binding transcriptional regulator OxyR 0.69 KEDOAH_26160 type I DNA topoisomerase — —
Escherichia coli ECRC98 0.37 JDDGAC_17190 oxyR DNA-binding transcriptional regulator OxyR 0.69 JDDGAC_05150 type I DNA topoisomerase — —
Escherichia coli ECRC101 0.37 MCAODC_04065 oxyR DNA-binding transcriptional regulator OxyR 0.69 MCAODC_15660 type I DNA topoisomerase — —
Escherichia coli BL21 0.37 ECD_03846 oxidative and nitrosative stress transcriptional regulator 0.69 ECD_01250 DNA topoisomerase I, omega subunit low > 60
Escherichia coli ECRC101 0.37 OKFHMN_13565 oxyR DNA-binding transcriptional regulator OxyR 0.69 OKFHMN_02605 type I DNA topoisomerase — —
Escherichia coli ECOR38 0.37 HEPCGN_12210 oxyR DNA-binding transcriptional regulator OxyR 0.69 HEPCGN_25595 type I DNA topoisomerase low > 85
Dickeya dadantii 3937 0.37 DDA3937_RS00970 DNA-binding transcriptional regulator OxyR 0.67 DDA3937_RS10535 type I DNA topoisomerase — —
Escherichia coli ECOR27 0.37 NOLOHH_05700 oxyR DNA-binding transcriptional regulator OxyR 0.69 NOLOHH_20270 type I DNA topoisomerase — —
Pectobacterium carotovorum WPP14 0.36 HER17_RS00955 DNA-binding transcriptional regulator OxyR 0.66 HER17_RS10875 type I DNA topoisomerase — —
Enterobacter sp. TBS_079 0.36 MPMX20_04519 Hydrogen peroxide-inducible genes activator 0.67 MPMX20_02502 DNA topoisomerase 1 — —
Enterobacter asburiae PDN3 0.36 EX28DRAFT_4424 Transcriptional regulator 0.67 EX28DRAFT_0945 DNA topoisomerase I, bacterial — —
Klebsiella michiganensis M5al 0.36 BWI76_RS00865 DNA-binding transcriptional regulator OxyR 0.67 BWI76_RS11925 DNA topoisomerase I — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF2347 Hydrogen peroxide-inducible genes activator 0.68 GFF2714 DNA topoisomerase I (EC 5.99.1.2) — —
Rahnella sp. WP5 0.35 EX31_RS14170 DNA-binding transcriptional regulator OxyR 0.67 EX31_RS09895 type I DNA topoisomerase low > 89
Pantoea sp. MT58 0.35 IAI47_00930 DNA-binding transcriptional regulator OxyR 0.67 IAI47_09235 type I DNA topoisomerase low > 76
Serratia liquefaciens MT49 0.35 IAI46_24475 DNA-binding transcriptional regulator OxyR 0.67 IAI46_13970 type I DNA topoisomerase low > 86
Erwinia tracheiphila SCR3 0.35 LU632_RS19590 oxyR DNA-binding transcriptional regulator OxyR 0.66 LU632_RS12555 topA type I DNA topoisomerase — —
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_13340 DNA-binding transcriptional regulator OxyR 0.66 CSW01_08695 DNA topoisomerase 1 — —
Acinetobacter radioresistens SK82 0.26 MPMX26_02334 Hydrogen peroxide-inducible genes activator 0.66 MPMX26_00365 DNA topoisomerase 1 — —
Shewanella oneidensis MR-1 0.25 SO1328 transcriptional regulator, LysR family (NCBI ptt file) 0.68 SO2705 topA DNA topoisomerase I (NCBI ptt file) — —
Shewanella sp. ANA-3 0.25 Shewana3_3046 LysR family transcriptional regulator (RefSeq) 0.69 Shewana3_1729 DNA topoisomerase I (RefSeq) — —
Alteromonas macleodii MIT1002 0.24 MIT1002_01120 Morphology and auto-aggregation control protein 0.68 MIT1002_01705 DNA topoisomerase 1 — —
Shewanella amazonensis SB2B 0.24 Sama_0860 LysR family transcriptional regulator (RefSeq) 0.69 Sama_1322 DNA topoisomerase I (RefSeq) — —
Shewanella loihica PV-4 0.23 Shew_1035 LysR family transcriptional regulator (RefSeq) 0.67 Shew_2224 DNA topoisomerase I (RefSeq) — —

Not shown: 47 genomes with orthologs for Psest_4191 only; 5 genomes with orthologs for Psest_2651 only