Conservation of cofitness between PS417_06345 and PS417_12310 in Pseudomonas simiae WCS417

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_06345 pseudouridine synthase 1.0 PS417_12310 methionine synthase 0.22 8
Pseudomonas fluorescens SBW25 0.98 PFLU_RS06410 tRNA pseudouridine(13) synthase TruD 0.98 PFLU_RS13000 methionine synthase low > 109
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS06410 tRNA pseudouridine(13) synthase TruD 0.98 PFLU_RS13000 methionine synthase 0.17 36
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_16595 pseudouridine synthase 0.96 AO353_21615 methionine synthase low > 101
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_4679 tRNA pseudouridine 13 synthase (EC 4.2.1.-) 0.96 PfGW456L13_2847 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) low > 87
Pseudomonas fluorescens FW300-N2E2 0.92 Pf6N2E2_3041 tRNA pseudouridine 13 synthase (EC 4.2.1.-) 0.95 Pf6N2E2_2068 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) 0.29 11
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_3111 tRNA pseudouridine 13 synthase (EC 4.2.1.-) 0.96 Pf1N1B4_5661 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) low > 87
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_05905 pseudouridine synthase 0.96 AO356_00545 methionine synthase low > 104
Pseudomonas sp. RS175 0.91 PFR28_00423 tRNA pseudouridine synthase D 0.95 PFR28_01369 Methionine synthase low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.81 Psyr_1370 tRNA pseudouridine synthase D, TruD 0.92 Psyr_2464 methionine synthase (B12-dependent) low > 86
Pseudomonas syringae pv. syringae B728a 0.81 Psyr_1370 tRNA pseudouridine synthase D, TruD 0.92 Psyr_2464 methionine synthase (B12-dependent) low > 86
Pseudomonas putida KT2440 0.75 PP_1619 tRNA pseudouridine synthase D 0.88 PP_2375 cobalamin-dependent methionine synthase low > 96
Pseudomonas stutzeri RCH2 0.73 Psest_2811 Uncharacterized conserved protein 0.87 Psest_2102 5-methyltetrahydrofolate--homocysteine methyltransferase low > 67
Pseudomonas sp. S08-1 0.72 OH686_18165 tRNA pseudouridine(13) synthase 0.87 OH686_03335 methionine synthase low > 80
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_02815 tRNA pseudouridine(13) synthase TruD 0.64 CSW01_02060 methionine synthase low > 62
Shewanella amazonensis SB2B 0.33 Sama_1040 pseudouridylate synthase (RefSeq) 0.62 Sama_0758 metH B12-dependent methionine synthase (RefSeq) 0.46 56
Dickeya dianthicola ME23 0.32 DZA65_RS18035 tRNA pseudouridine(13) synthase TruD 0.65 DZA65_RS20250 methionine synthase low > 75
Dickeya dianthicola 67-19 0.32 HGI48_RS16960 tRNA pseudouridine(13) synthase TruD 0.64 HGI48_RS19130 methionine synthase low > 71
Rahnella sp. WP5 0.32 EX31_RS07845 tRNA pseudouridine(13) synthase TruD 0.66 EX31_RS11760 methionine synthase low > 89
Dickeya dadantii 3937 0.31 DDA3937_RS16890 tRNA pseudouridine(13) synthase TruD 0.65 DDA3937_RS19040 methionine synthase low > 74
Shewanella oneidensis MR-1 0.31 SO3436 conserved hypothetical protein (NCBI ptt file) 0.62 SO1030 metH 5-methyltetrahydrofolate--homocysteine methyltransferase (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.31 Shew_1209 pseudouridylate synthase (RefSeq) 0.62 Shew_0710 metH B12-dependent methionine synthase (RefSeq) low > 60
Shewanella sp. ANA-3 0.30 Shewana3_1120 tRNA pseudouridine synthase D, TruD (RefSeq) 0.62 Shewana3_3282 metH B12-dependent methionine synthase (RefSeq) low > 73
Kangiella aquimarina DSM 16071 0.30 B158DRAFT_2295 Uncharacterized conserved protein 0.64 B158DRAFT_2466 methionine synthase (B12-dependent) (EC 2.1.1.13) low > 40
Pectobacterium carotovorum WPP14 0.29 HER17_RS04335 tRNA pseudouridine(13) synthase TruD 0.66 HER17_RS02310 methionine synthase low > 75
Serratia liquefaciens MT49 0.29 IAI46_03765 tRNA pseudouridine(13) synthase TruD 0.65 IAI46_23155 methionine synthase low > 86
Enterobacter asburiae PDN3 0.29 EX28DRAFT_2841 tRNA pseudouridine synthase, TruD family 0.65 EX28DRAFT_4326 methionine synthase (B12-dependent) (EC 2.1.1.13) low > 76
Klebsiella michiganensis M5al 0.29 BWI76_RS22665 tRNA pseudouridine(13) synthase TruD 0.65 BWI76_RS01685 methionine synthase low > 92
Enterobacter sp. TBS_079 0.29 MPMX20_03631 tRNA pseudouridine synthase D 0.65 MPMX20_00235 Methionine synthase low > 85
Pantoea sp. MT58 0.28 IAI47_04215 tRNA pseudouridine(13) synthase TruD 0.66 IAI47_17990 methionine synthase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.28 GFF4793 tRNA pseudouridine 13 synthase (EC 4.2.1.-) 0.65 GFF1358 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.28 OHPLBJKB_00988 tRNA pseudouridine synthase D 0.65 OHPLBJKB_04030 Methionine synthase low > 73
Escherichia coli ECRC62 0.28 BNILDI_10840 truD tRNA pseudouridine(13) synthase TruD 0.65 BNILDI_06140 metH methionine synthase low > 75
Escherichia coli BW25113 0.28 b2745 truD tRNA pseudouridine synthase D (NCBI) 0.65 b4019 metH B12-dependent methionine synthase (NCBI) low > 76
Escherichia coli BL21 0.28 ECD_02595 tRNA(Glu) pseudouridine(13) synthase 0.65 ECD_03891 homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent low > 61
Escherichia coli ECRC102 0.28 NIAGMN_18245 truD tRNA pseudouridine(13) synthase TruD 0.65 NIAGMN_10990 metH methionine synthase — —
Escherichia coli ECRC98 0.28 JDDGAC_24140 truD tRNA pseudouridine(13) synthase TruD 0.65 JDDGAC_16865 metH methionine synthase low > 86
Escherichia coli ECRC99 0.28 KEDOAH_07665 truD tRNA pseudouridine(13) synthase TruD 0.65 KEDOAH_14920 metH methionine synthase — —
Escherichia coli ECRC100 0.28 OKFHMN_20475 truD tRNA pseudouridine(13) synthase TruD 0.65 OKFHMN_13240 metH methionine synthase low > 80
Escherichia coli ECRC101 0.28 MCAODC_11000 truD tRNA pseudouridine(13) synthase TruD 0.65 MCAODC_03740 metH methionine synthase low > 87
Escherichia coli ECOR38 0.28 HEPCGN_19655 truD tRNA pseudouridine(13) synthase TruD 0.65 HEPCGN_11885 metH methionine synthase low > 87
Escherichia coli Nissle 1917 0.28 ECOLIN_RS15350 tRNA pseudouridine(13) synthase TruD 0.65 ECOLIN_RS23160 methionine synthase low > 55
Escherichia coli ECOR27 0.28 NOLOHH_12290 truD tRNA pseudouridine(13) synthase TruD 0.65 NOLOHH_05380 metH methionine synthase low > 75
Escherichia fergusonii Becca 0.28 EFB2_01165 tRNA pseudouridine synthase D 0.65 EFB2_04592 Methionine synthase low > 86
Marinobacter adhaerens HP15 0.25 HP15_1278 pseudouridylate synthase 0.68 HP15_1792 B12-dependent methionine synthase low > 73

Not shown: 8 genomes with orthologs for PS417_06345 only; 18 genomes with orthologs for PS417_12310 only