Conservation of cofitness between GFF1031 and GFF2397 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF1031 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) 1.0 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.75 5
Escherichia coli BL21 0.92 ECD_04246 16S rRNA m(2)G1207 methyltransferase, SAM-dependent 0.87 ECD_03132 dehydroshikimate reductase, NAD(P)-binding low > 61
Escherichia coli BW25113 0.92 b4371 rsmC 16S ribosomal RNA m2G1207 methyltransferase (NCBI) 0.87 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) low > 76
Escherichia coli Nissle 1917 0.92 ECOLIN_RS25090 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.87 ECOLIN_RS18840 shikimate dehydrogenase low > 55
Escherichia coli ECRC98 0.92 JDDGAC_14895 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.87 JDDGAC_21185 aroE shikimate dehydrogenase low > 86
Escherichia coli ECRC100 0.92 OKFHMN_11300 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.87 OKFHMN_17565 aroE shikimate dehydrogenase low > 80
Escherichia coli ECRC101 0.92 MCAODC_01815 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.87 MCAODC_08085 aroE shikimate dehydrogenase low > 87
Escherichia coli ECRC102 0.92 NIAGMN_09150 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.87 NIAGMN_15325 aroE shikimate dehydrogenase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.91 OHPLBJKB_03691 Ribosomal RNA small subunit methyltransferase C 0.87 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) low > 73
Escherichia coli ECOR38 0.91 HEPCGN_09305 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.87 HEPCGN_16385 aroE shikimate dehydrogenase low > 87
Escherichia coli ECRC62 0.91 BNILDI_07980 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.87 BNILDI_02165 aroE shikimate dehydrogenase low > 75
Escherichia fergusonii Becca 0.91 EFB2_04076 Ribosomal RNA small subunit methyltransferase C 0.86 EFB2_00542 Shikimate dehydrogenase (NADP(+)) low > 86
Escherichia coli ECOR27 0.91 NOLOHH_03620 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.87 NOLOHH_09355 aroE shikimate dehydrogenase low > 75
Escherichia coli ECRC99 0.91 KEDOAH_16845 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.87 KEDOAH_10585 aroE shikimate dehydrogenase — —
Klebsiella michiganensis M5al 0.90 BWI76_RS04080 16S rRNA (guanine(1207)-N(2))-methyltransferase 0.79 BWI76_RS25645 shikimate dehydrogenase low > 92
Enterobacter sp. TBS_079 0.90 MPMX20_00669 Ribosomal RNA small subunit methyltransferase C 0.80 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) low > 85
Enterobacter asburiae PDN3 0.89 EX28DRAFT_3579 16S RNA G1207 methylase RsmC 0.81 EX28DRAFT_0046 shikimate dehydrogenase low > 76
Pantoea sp. MT58 0.76 IAI47_16375 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.62 IAI47_02315 shikimate dehydrogenase — —
Erwinia tracheiphila SCR3 0.74 LU632_RS03750 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.62 LU632_RS22445 aroE shikimate dehydrogenase low > 74
Dickeya dianthicola 67-19 0.74 HGI48_RS03340 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.60 HGI48_RS19190 shikimate dehydrogenase — —
Serratia liquefaciens MT49 0.73 IAI46_02860 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.66 IAI46_23240 shikimate dehydrogenase low > 86
Dickeya dianthicola ME23 0.73 DZA65_RS03385 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.61 DZA65_RS20315 shikimate dehydrogenase — —
Dickeya dadantii 3937 0.72 DDA3937_RS03190 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.61 DDA3937_RS19100 shikimate dehydrogenase — —
Pectobacterium carotovorum WPP14 0.71 HER17_RS18080 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.61 HER17_RS02250 shikimate dehydrogenase low > 75
Rahnella sp. WP5 0.68 EX31_RS04120 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.62 EX31_RS15950 shikimate dehydrogenase — —
Vibrio cholerae E7946 ATCC 55056 0.38 CSW01_03280 16S rRNA methyltransferase 0.48 CSW01_00280 shikimate dehydrogenase low > 62
Pseudomonas stutzeri RCH2 0.31 Psest_3224 16S RNA G1207 methylase RsmC 0.45 Psest_0029 shikimate 5-dehydrogenase — —
Shewanella oneidensis MR-1 0.28 SO0828 conserved hypothetical protein (NCBI ptt file) 0.46 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.34 73
Shewanella sp. ANA-3 0.28 Shewana3_3447 16S rRNA m(2)G 1207 methyltransferase (RefSeq) 0.48 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) low > 73
Pseudomonas fluorescens FW300-N2E3 0.28 AO353_14995 16S rRNA methyltransferase 0.45 AO353_10670 shikimate dehydrogenase low > 101
Shewanella loihica PV-4 0.28 Shew_3230 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) 0.46 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.75 5
Pseudomonas sp. RS175 0.28 PFR28_03623 Ribosomal RNA small subunit methyltransferase C 0.46 PFR28_04655 Shikimate dehydrogenase (NADP(+)) — —
Pseudomonas fluorescens FW300-N2E2 0.27 Pf6N2E2_3247 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) 0.46 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Pseudomonas fluorescens FW300-N2C3 0.27 AO356_06940 16S rRNA methyltransferase 0.46 AO356_11315 shikimate dehydrogenase low > 104
Pseudomonas fluorescens FW300-N1B4 0.27 Pf1N1B4_2953 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) 0.46 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.27 Psyr_0986 16S rRNA m(2)G 1207 methyltransferase 0.46 Psyr_0025 shikimate dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a 0.27 Psyr_0986 16S rRNA m(2)G 1207 methyltransferase 0.46 Psyr_0025 shikimate dehydrogenase low > 86
Pseudomonas sp. S08-1 0.27 OH686_06345 16S rRNA (guanine(1207)-N(2))-methyltransferase 0.46 OH686_12485 Shikimate 5-dehydrogenase I alpha low > 80
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_1616 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) 0.45 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 87
Pseudomonas putida KT2440 0.27 PP_0761 Ribosomal RNA small subunit methyltransferase C 0.42 PP_0074 shikimate 5-dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.26 PFLU_RS04570 class I SAM-dependent methyltransferase 0.45 PFLU_RS00120 shikimate dehydrogenase — —
Pseudomonas fluorescens SBW25 0.26 PFLU_RS04570 class I SAM-dependent methyltransferase 0.45 PFLU_RS00120 shikimate dehydrogenase — —
Pseudomonas simiae WCS417 0.26 PS417_04525 16S rRNA methyltransferase 0.44 PS417_00125 shikimate dehydrogenase — —
Marinobacter adhaerens HP15 0.25 HP15_2266 rRNA (guanine-N(2)-)-methyltransferase 0.39 HP15_3750 shikimate dehydrogenase — —
Shewanella amazonensis SB2B 0.25 Sama_0569 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) 0.42 Sama_0052 shikimate dehydrogenase (RefSeq) low > 62
Rhizobium sp. OAE497 0.15 ABIE40_RS00360 class I SAM-dependent methyltransferase 0.19 ABIE40_RS19250 shikimate dehydrogenase — —

Not shown: 0 genomes with orthologs for GFF1031 only; 46 genomes with orthologs for GFF2397 only