Conservation of cofitness between Psest_3813 and Psest_2306 in Pseudomonas stutzeri RCH2

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_3813 ribonuclease PH 1.0 Psest_2306 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA 0.22 18
Pseudomonas syringae pv. syringae B728a 0.93 Psyr_0213 RNAse PH 0.70 Psyr_1728 tRNA--hydroxylase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.93 Psyr_0213 RNAse PH 0.70 Psyr_1728 tRNA--hydroxylase 0.40 23
Pseudomonas sp. S08-1 0.93 OH686_13570 ribonuclease PH 0.64 OH686_03955 tRNA-(ms[2]io[6]A)-hydroxylase low > 80
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_4365 Ribonuclease PH (EC 2.7.7.56) 0.62 Pf6N2E2_568 tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-) low > 103
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_2117 Ribonuclease PH (EC 2.7.7.56) 0.62 Pf1N1B4_4567 tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-) low > 87
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_12500 ribonuclease PH 0.63 AO356_24405 tRNA hydroxylase low > 104
Pseudomonas simiae WCS417 0.92 PS417_27810 ribonuclease PH 0.63 PS417_14975 tRNA hydroxylase low > 88
Pseudomonas fluorescens SBW25 0.92 PFLU_RS29490 ribonuclease PH 0.62 PFLU_RS17005 tRNA hydroxylase low > 109
Pseudomonas fluorescens SBW25-INTG 0.92 PFLU_RS29490 ribonuclease PH 0.62 PFLU_RS17005 tRNA hydroxylase low > 109
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_784 Ribonuclease PH (EC 2.7.7.56) 0.62 PfGW456L13_3375 tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-) low > 87
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_09260 ribonuclease PH 0.62 AO353_22955 tRNA hydroxylase low > 101
Pseudomonas sp. RS175 0.91 PFR28_04420 Ribonuclease PH 0.62 PFR28_02373 hypothetical protein low > 88
Pseudomonas putida KT2440 0.90 PP_5294 Ribonuclease PH 0.60 PP_2188 putative tRNA-(Ms(2)io(6)a)-hydroxylase low > 96
Marinobacter adhaerens HP15 0.72 HP15_300 ribonuclease PH 0.54 HP15_2202 tRNA-(ms(2)io(6)a)-hydroxylase low > 73
Kangiella aquimarina DSM 16071 0.71 B158DRAFT_0588 ribonuclease PH 0.47 B158DRAFT_1015 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA low > 40
Alteromonas macleodii MIT1002 0.70 MIT1002_04071 Ribonuclease PH 0.39 MIT1002_02520 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) low > 70
Dickeya dadantii 3937 0.69 DDA3937_RS20540 ribonuclease PH 0.37 DDA3937_RS05765 tRNA-(ms[2]io[6]A)-hydroxylase low > 74
Shewanella loihica PV-4 0.68 Shew_3488 ribonuclease PH (RefSeq) 0.40 Shew_2514 tRNA--hydroxylase (RefSeq) low > 60
Shewanella sp. ANA-3 0.67 Shewana3_3777 RNAse PH (RefSeq) 0.39 Shewana3_2667 tRNA hydroxylase (RefSeq) low > 73
Serratia liquefaciens MT49 0.67 IAI46_24850 ribonuclease PH 0.40 IAI46_02330 tRNA-(ms[2]io[6]A)-hydroxylase low > 86
Shewanella oneidensis MR-1 0.67 SO4256 rph ribonuclease PH (NCBI ptt file) 0.39 SO1788 miaE tRNA-(MS[2]IO[6]A)-hydroxylase (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.67 Sama_0320 tRNA nucleotidyltransferase (RefSeq) 0.37 Sama_1218 tRNA-hydroxylase (RefSeq) low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.66 GFF366 Ribonuclease PH (EC 2.7.7.56) 0.38 GFF942 tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-) low > 78
Rahnella sp. WP5 0.66 EX31_RS14505 ribonuclease PH 0.49 EX31_RS22630 tRNA-(ms[2]io[6]A)-hydroxylase low > 89
Enterobacter sp. TBS_079 0.66 MPMX20_00092 Ribonuclease PH 0.37 MPMX20_00558 hypothetical protein low > 85
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3893 ribonuclease PH 0.36 EX28DRAFT_3463 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA low > 76
Acinetobacter radioresistens SK82 0.66 MPMX26_00040 Ribonuclease PH 0.48 MPMX26_02151 hypothetical protein low > 36
Klebsiella michiganensis M5al 0.65 BWI76_RS27390 ribonuclease PH 0.37 BWI76_RS03020 tRNA hydroxylase low > 92
Pantoea sp. MT58 0.65 IAI47_00595 ribonuclease PH 0.37 IAI47_16820 tRNA-(ms[2]io[6]A)-hydroxylase low > 76
Vibrio cholerae E7946 ATCC 55056 0.63 CSW01_01115 ribonuclease PH 0.34 CSW01_09555 tRNA-(ms[2]io[6]A)-hydroxylase low > 62
Synechococcus elongatus PCC 7942 0.51 Synpcc7942_1073 rph ribonuclease PH 0.32 Synpcc7942_0914 tRNA-(MS(2)IO(6)A)-hydroxylase-like low > 38

Not shown: 57 genomes with orthologs for Psest_3813 only; 2 genomes with orthologs for Psest_2306 only