Conservation of cofitness between PS417_13100 and PS417_10465 in Pseudomonas simiae WCS417

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_13100 ABC transporter ATP-binding protein 1.0 PS417_10465 tRNA 2-selenouridine synthase 0.20 13
Pseudomonas fluorescens GW456-L13 0.94 PfGW456L13_3023 ABC transporter ATP-binding protein uup 0.83 PfGW456L13_2463 Selenophosphate-dependent tRNA 2-selenouridine synthase low > 87
Pseudomonas sp. RS175 0.93 PFR28_01696 putative ABC transporter ATP-binding protein YbiT 0.83 PFR28_01286 tRNA 2-selenouridine synthase low > 88
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_27740 ABC transporter ATP-binding protein 0.82 AO356_01390 tRNA 2-selenouridine synthase low > 104
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_795 ABC transporter ATP-binding protein uup 0.82 Pf6N2E2_2150 Selenophosphate-dependent tRNA 2-selenouridine synthase low > 103
Pseudomonas syringae pv. syringae B728a 0.93 Psyr_2495 ABC transporter 0.74 Psyr_0697 tRNA 2-selenouridine synthase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.93 Psyr_2495 ABC transporter 0.74 Psyr_0697 tRNA 2-selenouridine synthase low > 86
Pseudomonas putida KT2440 0.93 PP_2936 putative ATP-binding component of a transport system 0.73 PP_0822 tRNA 2-selenouridine synthase low > 96
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_4749 ABC transporter ATP-binding protein uup 0.84 Pf1N1B4_96 Selenophosphate-dependent tRNA 2-selenouridine synthase low > 87
Pseudomonas sp. S08-1 0.93 OH686_00750 Bis-ABC ATPase YbiT 0.75 OH686_21215 tRNA 2-selenouridine synthase low > 80
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_26510 ABC transporter ATP-binding protein 0.82 AO353_00045 tRNA 2-selenouridine synthase low > 101
Pseudomonas stutzeri RCH2 0.92 Psest_2115 ATPase components of ABC transporters with duplicated ATPase domains 0.75 Psest_2461 tRNA 2-selenouridine synthase low > 67
Marinobacter adhaerens HP15 0.86 HP15_2628 ABC transporter ATP-binding protein-like protein 0.49 HP15_3380 rhodanese domain protein low > 73
Shewanella amazonensis SB2B 0.80 Sama_1386 ABC transporter, ATP-binding protein (RefSeq) 0.47 Sama_0189 tRNA 2-selenouridine synthase (RefSeq) low > 62
Serratia liquefaciens MT49 0.79 IAI46_07820 ABC-F family ATPase 0.49 IAI46_14310 tRNA 2-selenouridine(34) synthase MnmH low > 86
Shewanella loihica PV-4 0.79 Shew_1676 ABC transporter-related protein (RefSeq) 0.46 Shew_0134 tRNA 2-selenouridine synthase (RefSeq) — —
Escherichia fergusonii Becca 0.77 EFB2_03285 putative ABC transporter ATP-binding protein YbiT 0.41 EFB2_03558 tRNA 2-selenouridine synthase low > 86
Escherichia coli BL21 0.77 ECD_00787 ABC-F family putative regulatory ATPase 0.41 ECD_00453 tRNA 2-selenouridine synthase, selenophosphate-dependent low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_02893 putative ABC transporter ATP-binding protein YbiT 0.41 OHPLBJKB_03177 tRNA 2-selenouridine synthase low > 73
Escherichia coli BW25113 0.77 b0820 ybiT fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) 0.41 b0503 ybbB tRNA 2-selenouridine synthase, selenophosphate-dependent (NCBI) low > 76
Escherichia coli ECOR27 0.77 NOLOHH_22510 ybiT ABC-F family ATPase 0.42 NOLOHH_00925 mnmH tRNA 2-selenouridine(34) synthase MnmH low > 57
Escherichia coli ECRC101 0.77 MCAODC_25375 ybiT ABC-F family ATPase 0.41 MCAODC_27160 mnmH tRNA 2-selenouridine(34) synthase MnmH — —
Escherichia coli ECRC99 0.77 KEDOAH_21750 ybiT ABC-F family ATPase 0.41 KEDOAH_20025 mnmH tRNA 2-selenouridine(34) synthase MnmH — —
Escherichia coli ECRC98 0.77 JDDGAC_09795 ybiT ABC-F family ATPase 0.41 JDDGAC_11590 mnmH tRNA 2-selenouridine(34) synthase MnmH — —
Escherichia coli ECOR38 0.77 HEPCGN_01880 ybiT ABC-F family ATPase 0.41 HEPCGN_06580 mnmH tRNA 2-selenouridine(34) synthase MnmH low > 85
Escherichia coli ECRC102 0.77 NIAGMN_04205 ybiT ABC-F family ATPase 0.41 NIAGMN_05995 mnmH tRNA 2-selenouridine(34) synthase MnmH — —
Escherichia coli ECRC101 0.77 OKFHMN_06160 ybiT ABC-F family ATPase 0.41 OKFHMN_07945 mnmH tRNA 2-selenouridine(34) synthase MnmH — —
Escherichia coli ECRC62 0.77 BNILDI_20790 ybiT ABC-F family ATPase 0.41 BNILDI_22355 mnmH tRNA 2-selenouridine(34) synthase MnmH — —
Enterobacter asburiae PDN3 0.77 EX28DRAFT_2147 ATPase components of ABC transporters with duplicated ATPase domains 0.43 EX28DRAFT_2461 tRNA 2-selenouridine synthase low > 76
Enterobacter sp. TBS_079 0.77 MPMX20_01457 putative ABC transporter ATP-binding protein YbiT 0.42 MPMX20_01096 tRNA 2-selenouridine synthase low > 85
Shewanella oneidensis MR-1 0.77 SO1690 ABC transporter, ATP-binding protein (NCBI ptt file) 0.49 SO0195 ybbB ybbB protein (NCBI ptt file) low > 76
Klebsiella michiganensis M5al 0.77 BWI76_RS09040 ABC-F family ATPase 0.40 BWI76_RS06970 selenophosphate-dependent tRNA 2-selenouridine synthase low > 92
Shewanella sp. ANA-3 0.76 Shewana3_2760 ABC transporter related (RefSeq) 0.48 Shewana3_0175 tRNA 2-selenouridine synthase (RefSeq) low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.76 GFF717 Putative ATPase component of ABC transporter with duplicated ATPase domain 0.42 GFF4419 Selenophosphate-dependent tRNA 2-selenouridine synthase low > 78
Herbaspirillum seropedicae SmR1 0.69 HSERO_RS11060 ABC transporter ATP-binding protein 0.63 HSERO_RS15815 tRNA 2-selenouridine synthase — —
Paraburkholderia graminis OAS925 0.68 ABIE53_002379 ATPase subunit of ABC transporter with duplicated ATPase domains 0.16 ABIE53_004984 tRNA 2-selenouridine synthase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.67 H281DRAFT_05171 ATPase components of ABC transporters with duplicated ATPase domains 0.15 H281DRAFT_06383 tRNA 2-selenouridine synthase low > 103
Dechlorosoma suillum PS 0.67 Dsui_0753 ATPase component of ABC transporters with duplicated ATPase domain 0.16 Dsui_2310 tRNA 2-selenouridine synthase low > 51
Cupriavidus basilensis FW507-4G11 0.67 RR42_RS11370 ABC transporter ATP-binding protein 0.59 RR42_RS01810 tRNA 2-selenouridine synthase low > 128
Paraburkholderia sabiae LMG 24235 0.66 QEN71_RS07090 ABC-F family ATPase 0.17 QEN71_RS13610 tRNA 2-selenouridine(34) synthase MnmH low > 153
Pontibacter actiniarum KMM 6156, DSM 19842 0.49 CA264_06580 ABC-F family ATPase 0.20 CA264_15280 tRNA 2-selenouridine synthase low > 74

Not shown: 30 genomes with orthologs for PS417_13100 only; 5 genomes with orthologs for PS417_10465 only