Conservation of cofitness between GFF2120 and GFF1580 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF2120 FIG00554530: hypothetical protein 1.0 GFF1580 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) 0.42 6
Enterobacter sp. TBS_079 0.72 MPMX20_04172 putative signaling protein 0.33 MPMX20_00612 HTH-type transcriptional regulatory protein GabR low > 85
Enterobacter asburiae PDN3 0.71 EX28DRAFT_3316 diguanylate cyclase (GGDEF) domain 0.33 EX28DRAFT_3513 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs low > 76
Pantoea sp. MT58 0.64 IAI47_03280 EAL domain-containing protein 0.31 IAI47_01110 PLP-dependent aminotransferase family protein low > 76
Rahnella sp. WP5 0.61 EX31_RS12105 bifunctional diguanylate cyclase/phosphodiesterase 0.44 EX31_RS13555 PLP-dependent aminotransferase family protein low > 89
Cupriavidus basilensis FW507-4G11 0.53 RR42_RS22465 membrane protein 0.41 RR42_RS09965 DNA-binding protein low > 128
Ralstonia solanacearum PSI07 0.53 RPSI07_RS21500 bifunctional diguanylate cyclase/phosphodiesterase 0.31 RPSI07_RS23800 PLP-dependent aminotransferase family protein low > 81
Ralstonia sp. UNC404CL21Col 0.52 ABZR87_RS07670 bifunctional diguanylate cyclase/phosphodiesterase 0.42 ABZR87_RS18535 PLP-dependent aminotransferase family protein low > 80
Ralstonia solanacearum GMI1000 0.52 RS_RS02540 bifunctional diguanylate cyclase/phosphodiesterase 0.31 RS_RS00150 PLP-dependent aminotransferase family protein low > 80
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS11715 bifunctional diguanylate cyclase/phosphodiesterase 0.31 RALBFv3_RS09550 PLP-dependent aminotransferase family protein low > 76
Ralstonia solanacearum UW163 0.52 UW163_RS01870 bifunctional diguanylate cyclase/phosphodiesterase 0.31 UW163_RS04030 PLP-dependent aminotransferase family protein — —
Pseudomonas fluorescens FW300-N2E2 0.51 Pf6N2E2_467 Sensory box/GGDEF family protein 0.26 Pf6N2E2_4288 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) low > 103
Pseudomonas fluorescens FW300-N2C3 0.51 AO356_22925 histidine kinase 0.28 AO356_12070 GntR family transcriptional regulator low > 104
Pseudomonas sp. RS175 0.51 PFR28_02457 putative signaling protein 0.26 PFR28_04508 HTH-type transcriptional regulatory protein GabR low > 88
Pseudomonas fluorescens FW300-N1B4 0.51 Pf1N1B4_4670 Sensory box/GGDEF family protein 0.29 Pf1N1B4_5999 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) low > 87
Pseudomonas fluorescens GW456-L13 0.50 PfGW456L13_3263 Sensory box/GGDEF family protein 0.30 PfGW456L13_3163 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) low > 87
Pseudomonas fluorescens SBW25-INTG 0.50 PFLU_RS13445 bifunctional diguanylate cyclase/phosphodiesterase 0.28 PFLU_RS29850 PLP-dependent aminotransferase family protein low > 109
Pseudomonas fluorescens SBW25 0.50 PFLU_RS13445 bifunctional diguanylate cyclase/phosphodiesterase 0.28 PFLU_RS29850 PLP-dependent aminotransferase family protein low > 109
Herbaspirillum seropedicae SmR1 0.50 HSERO_RS16570 membrane protein 0.31 HSERO_RS05425 decarboxylase low > 78
Pseudomonas fluorescens FW300-N2E3 0.50 AO353_22910 histidine kinase 0.30 AO353_20995 transcriptional regulator low > 101
Pseudomonas simiae WCS417 0.50 PS417_12760 histidine kinase 0.44 PS417_12985 DNA-binding protein low > 88
Pseudomonas putida KT2440 0.49 PP_3581 conserved membrane protein of unknown function 0.28 PP_5342 Transcriptional regulator, GntR family low > 96
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS30355 bifunctional diguanylate cyclase/phosphodiesterase 0.38 QEN71_RS38860 PLP-dependent aminotransferase family protein low > 153
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_2486 diguanylate cyclase/phosphodiesterase 0.27 Psyr_5056 transcriptional regulator, GntR family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_2486 diguanylate cyclase/phosphodiesterase 0.27 Psyr_5056 transcriptional regulator, GntR family low > 86
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS29225 diguanylate phosphodiesterase 0.40 BPHYT_RS21610 DNA-binding protein low > 109
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_01476 diguanylate cyclase/phosphodiesterase 0.33 H281DRAFT_01557 transcriptional regulator, GntR family low > 103
Paraburkholderia graminis OAS925 0.36 ABIE53_005195 diguanylate cyclase (GGDEF)-like protein 0.30 ABIE53_004748 GntR family transcriptional regulator/MocR family aminotransferase low > 113
Acinetobacter radioresistens SK82 0.35 MPMX26_00475 putative signaling protein 0.29 MPMX26_02006 HTH-type transcriptional regulatory protein GabR — —
Variovorax sp. SCN45 0.34 GFF3184 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) 0.44 GFF844 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) low > 127
Pseudomonas sp. S08-1 0.31 OH686_19830 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) 0.28 OH686_13310 Transcriptional regulator, GntR family domain / Aspartate aminotransferase low > 80
Rhizobium sp. OAE497 0.24 ABIE40_RS00480 EAL domain-containing protein 0.27 ABIE40_RS04930 PLP-dependent aminotransferase family protein low > 107
Phaeobacter inhibens DSM 17395 0.23 PGA1_c31770 putative signaling protein with diguanylate cyclase/phosphodiesterase activity 0.28 PGA1_262p01530 transcriptional regulator, GntR family low > 62

Not shown: 3 genomes with orthologs for GFF2120 only; 32 genomes with orthologs for GFF1580 only