Conservation of cofitness between EX31_RS19675 and EX31_RS16820 in Rahnella sp. WP5

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS19675 TSUP family transporter 1.0 EX31_RS16820 Rsd/AlgQ family anti-sigma factor 0.33 6
Serratia liquefaciens MT49 0.79 IAI46_18015 TSUP family transporter 0.67 IAI46_01325 Rsd/AlgQ family anti-sigma factor low > 86
Enterobacter sp. TBS_079 0.76 MPMX20_03262 putative membrane transporter protein YfcA 0.52 MPMX20_00218 Regulator of sigma D low > 85
Enterobacter asburiae PDN3 0.76 EX28DRAFT_0277 Predicted permeases 0.49 EX28DRAFT_4537 Regulator of sigma D low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF1948 Putative membrane protein YfcA 0.52 GFF4197 Regulator of sigma D low > 78
Pantoea sp. MT58 0.75 IAI47_06160 TSUP family transporter 0.53 IAI47_18080 Rsd/AlgQ family anti-sigma factor low > 76
Klebsiella michiganensis M5al 0.74 BWI76_RS20425 hypothetical protein 0.50 BWI76_RS01560 Rsd/AlgQ family anti-sigma factor — —
Escherichia coli ECOR38 0.71 HEPCGN_21830 yfcA putative membrane transporter protein YfcA 0.52 HEPCGN_12005 rsd sigma D regulator low > 87
Escherichia fergusonii Becca 0.71 EFB2_01531 putative membrane transporter protein YfcA 0.51 EFB2_04616 Regulator of sigma D low > 86
Escherichia coli ECRC98 0.71 JDDGAC_26585 yfcA putative membrane transporter protein YfcA 0.52 JDDGAC_16995 rsd sigma D regulator low > 86
Escherichia coli ECRC102 0.71 NIAGMN_20400 yfcA putative membrane transporter protein YfcA 0.52 NIAGMN_11120 rsd sigma D regulator — —
Escherichia coli Nissle 1917 0.71 ECOLIN_RS13480 sulfite exporter TauE/SafE family protein 0.51 ECOLIN_RS23045 sigma D regulator — —
Escherichia coli BW25113 0.71 b2327 yfcA conserved inner membrane protein (NCBI) 0.52 b3995 rsd stationary phase protein, binds sigma 70 RNA polymerase subunit (NCBI) low > 76
Escherichia coli ECRC101 0.71 MCAODC_13665 yfcA putative membrane transporter protein YfcA 0.52 MCAODC_03870 rsd sigma D regulator low > 87
Escherichia coli ECOR27 0.71 NOLOHH_14260 yfcA putative membrane transporter protein YfcA 0.52 NOLOHH_05515 rsd sigma D regulator low > 75
Escherichia coli ECRC100 0.71 OKFHMN_22625 yfcA putative membrane transporter protein YfcA 0.52 OKFHMN_13370 rsd sigma D regulator low > 80
Escherichia coli BL21 0.71 ECD_02252 TauE/TSUP family inner membrane protein 0.52 ECD_03872 stationary phase protein, binds sigma 70 RNA polymerase subunit low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_01378 putative membrane transporter protein YfcA 0.52 OHPLBJKB_04055 Regulator of sigma D low > 73
Escherichia coli ECRC99 0.71 KEDOAH_05570 yfcA putative membrane transporter protein YfcA 0.52 KEDOAH_14790 rsd sigma D regulator — —
Escherichia coli ECRC62 0.71 BNILDI_13180 yfcA putative membrane transporter protein YfcA 0.52 BNILDI_06010 rsd sigma D regulator low > 75
Pectobacterium carotovorum WPP14 0.71 HER17_RS06945 sulfite exporter TauE/SafE family protein 0.45 HER17_RS20375 Rsd/AlgQ family anti-sigma factor low > 75
Erwinia tracheiphila SCR3 0.69 LU632_RS07785 sulfite exporter TauE/SafE family protein 0.49 LU632_RS00975 Rsd/AlgQ family anti-sigma factor low > 74
Dickeya dadantii 3937 0.69 DDA3937_RS14570 TSUP family transporter 0.32 DDA3937_RS01180 Rsd/AlgQ family anti-sigma factor low > 74
Dickeya dianthicola 67-19 0.65 HGI48_RS14520 TSUP family transporter 0.32 HGI48_RS01175 sigma D regulator low > 71
Dickeya dianthicola ME23 0.65 DZA65_RS15455 TSUP family transporter 0.32 DZA65_RS01220 Rsd/AlgQ family anti-sigma factor low > 75
Shewanella sp. ANA-3 0.54 Shewana3_2613 hypothetical protein (RefSeq) 0.31 Shewana3_0434 anti-RNA polymerase sigma 70 factor (RefSeq) low > 73
Shewanella amazonensis SB2B 0.54 Sama_1266 hypothetical protein (RefSeq) 0.32 Sama_0386 anti-RNA polymerase sigma 70 factor (RefSeq) low > 62
Shewanella oneidensis MR-1 0.53 SO2846 conserved hypothetical protein (NCBI ptt file) 0.33 SO0433 rsd regulator of sigma D (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.48 Shew_2464 hypothetical protein (RefSeq) 0.33 Shew_3423 anti-RNA polymerase sigma 70 factor (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.41 CSW01_12070 hypothetical protein 0.26 CSW01_01710 Rsd/AlgQ family anti-sigma factor low > 62
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_369 Putative membrane protein YfcA 0.22 PfGW456L13_861 Regulator of sigma D low > 87
Pseudomonas fluorescens FW300-N1B4 0.31 Pf1N1B4_4779 Membrane protein, putative 0.23 Pf1N1B4_2190 Regulator of sigma D — —
Pseudomonas sp. RS175 0.31 PFR28_02189 putative membrane transporter protein YfcA 0.22 PFR28_04361 Regulator of sigma D low > 88
Pseudomonas fluorescens FW300-N2E2 0.31 Pf6N2E2_1267 Membrane protein, putative 0.22 Pf6N2E2_4435 Regulator of sigma D low > 103
Pseudomonas fluorescens FW300-N2C3 0.30 AO356_25900 hypothetical protein 0.22 AO356_12810 transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N2E3 0.30 AO353_26530 hypothetical protein 0.23 AO353_08965 transcriptional regulator low > 101
Pseudomonas simiae WCS417 0.30 PS417_12880 membrane protein 0.23 PS417_27505 transcriptional regulator — —
Pseudomonas fluorescens SBW25 0.29 PFLU_RS13560 TSUP family transporter 0.22 PFLU_RS29185 Rsd/AlgQ family anti-sigma factor low > 109
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS13560 TSUP family transporter 0.22 PFLU_RS29185 Rsd/AlgQ family anti-sigma factor 0.30 88
Pseudomonas stutzeri RCH2 0.29 Psest_2079 Predicted permeases 0.25 Psest_3743 Regulator of sigma D low > 67
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_2454 Protein of unknown function DUF81 0.23 Psyr_0056 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_2454 Protein of unknown function DUF81 0.23 Psyr_0056 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ low > 86
Pseudomonas sp. S08-1 0.26 OH686_03525 hypothetical protein 0.25 OH686_13925 Alginate regulatory protein AlgQ, positive transcriptional regulator of AlgD low > 80
Pseudomonas putida KT2440 0.25 PP_0487 conserved membrane protein of unknown function 0.22 PP_0191 Transcriptional regulatory protein AlgQ low > 96
Marinobacter adhaerens HP15 0.10 HP15_2204 membrane protein containing DUF81 0.28 HP15_221 anti-RNA polymerase sigma 70 factor 0.71 33

Not shown: 28 genomes with orthologs for EX31_RS19675 only; 1 genomes with orthologs for EX31_RS16820 only