Conservation of cofitness between EX31_RS19675 and EX31_RS14140 in Rahnella sp. WP5

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS19675 TSUP family transporter 1.0 EX31_RS14140 tRNA (uridine(54)-C5)-methyltransferase TrmA 0.32 11
Serratia liquefaciens MT49 0.79 IAI46_18015 TSUP family transporter 0.85 IAI46_24455 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 86
Enterobacter sp. TBS_079 0.76 MPMX20_03262 putative membrane transporter protein YfcA 0.78 MPMX20_04515 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 85
Enterobacter asburiae PDN3 0.76 EX28DRAFT_0277 Predicted permeases 0.78 EX28DRAFT_4428 tRNA (uracil(54)-C(5))-methyltransferase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF1948 Putative membrane protein YfcA 0.78 GFF2351 tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) low > 78
Pantoea sp. MT58 0.75 IAI47_06160 TSUP family transporter 0.80 IAI47_00950 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 76
Klebsiella michiganensis M5al 0.74 BWI76_RS20425 hypothetical protein 0.77 BWI76_RS00885 tRNA (uridine(54)-C5)-methyltransferase TrmA — —
Escherichia coli ECOR38 0.71 HEPCGN_21830 yfcA putative membrane transporter protein YfcA 0.77 HEPCGN_12190 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 87
Escherichia fergusonii Becca 0.71 EFB2_01531 putative membrane transporter protein YfcA 0.77 EFB2_04645 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 86
Escherichia coli ECRC102 0.71 NIAGMN_20400 yfcA putative membrane transporter protein YfcA 0.78 NIAGMN_11285 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA — —
Escherichia coli ECRC99 0.71 KEDOAH_05570 yfcA putative membrane transporter protein YfcA 0.78 KEDOAH_14625 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA — —
Escherichia coli ECOR27 0.71 NOLOHH_14260 yfcA putative membrane transporter protein YfcA 0.78 NOLOHH_05680 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 75
Escherichia coli BL21 0.71 ECD_02252 TauE/TSUP family inner membrane protein 0.78 ECD_03850 tRNA m(5)U54 methyltransferase, SAM-dependent; tmRNA m(5)U341 methyltransferase low > 61
Escherichia coli BW25113 0.71 b2327 yfcA conserved inner membrane protein (NCBI) 0.78 b3965 trmA tRNA (uracil-5-)-methyltransferase (NCBI) low > 76
Escherichia coli ECRC100 0.71 OKFHMN_22625 yfcA putative membrane transporter protein YfcA 0.78 OKFHMN_13535 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 80
Escherichia coli ECRC101 0.71 MCAODC_13665 yfcA putative membrane transporter protein YfcA 0.77 MCAODC_04035 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 87
Escherichia coli Nissle 1917 0.71 ECOLIN_RS13480 sulfite exporter TauE/SafE family protein 0.77 ECOLIN_RS22900 tRNA (uridine(54)-C5)-methyltransferase TrmA — —
Escherichia coli ECRC98 0.71 JDDGAC_26585 yfcA putative membrane transporter protein YfcA 0.78 JDDGAC_17160 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_01378 putative membrane transporter protein YfcA 0.78 OHPLBJKB_04085 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 73
Escherichia coli ECRC62 0.71 BNILDI_13180 yfcA putative membrane transporter protein YfcA 0.78 BNILDI_05845 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 75
Pectobacterium carotovorum WPP14 0.71 HER17_RS06945 sulfite exporter TauE/SafE family protein 0.80 HER17_RS00975 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 75
Erwinia tracheiphila SCR3 0.69 LU632_RS07785 sulfite exporter TauE/SafE family protein 0.74 LU632_RS19550 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 74
Dickeya dadantii 3937 0.69 DDA3937_RS14570 TSUP family transporter 0.82 DDA3937_RS00990 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 74
Dickeya dianthicola 67-19 0.65 HGI48_RS14520 TSUP family transporter 0.81 HGI48_RS20385 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 71
Dickeya dianthicola ME23 0.65 DZA65_RS15455 TSUP family transporter 0.80 DZA65_RS21430 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 75
Shewanella sp. ANA-3 0.54 Shewana3_2613 hypothetical protein (RefSeq) 0.58 Shewana3_0179 tRNA (uracil-5-)-methyltransferase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.54 Sama_1266 hypothetical protein (RefSeq) 0.60 Sama_0193 tRNA (uracil-5-)-methyltransferase (RefSeq) low > 62
Shewanella oneidensis MR-1 0.53 SO2846 conserved hypothetical protein (NCBI ptt file) 0.59 SO0206 trmA tRNA (uracil-5-)-methyltransferase (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.48 Shew_2464 hypothetical protein (RefSeq) 0.62 Shew_0138 tRNA (uracil-5-)-methyltransferase (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.41 CSW01_12070 hypothetical protein 0.65 CSW01_00785 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 62
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_369 Putative membrane protein YfcA 0.48 PfGW456L13_1430 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) low > 87
Pseudomonas fluorescens FW300-N1B4 0.31 Pf1N1B4_4779 Membrane protein, putative 0.49 Pf1N1B4_2754 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) — —
Pseudomonas sp. RS175 0.31 PFR28_02189 putative membrane transporter protein YfcA 0.50 PFR28_03809 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 88
Pseudomonas fluorescens FW300-N2E2 0.31 Pf6N2E2_1267 Membrane protein, putative 0.49 Pf6N2E2_5063 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) 0.20 28
Pseudomonas fluorescens FW300-N2C3 0.30 AO356_25900 hypothetical protein 0.49 AO356_15600 tRNA (uracil-5-)-methyltransferase 0.19 51
Pseudomonas fluorescens FW300-N2E3 0.30 AO353_26530 hypothetical protein 0.49 AO353_13905 tRNA (uracil-5-)-methyltransferase low > 101
Pseudomonas simiae WCS417 0.30 PS417_12880 membrane protein 0.48 PS417_24385 tRNA (uracil-5-)-methyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS13560 TSUP family transporter 0.48 PFLU_RS26305 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 109
Pseudomonas fluorescens SBW25 0.29 PFLU_RS13560 TSUP family transporter 0.48 PFLU_RS26305 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 109
Pseudomonas stutzeri RCH2 0.29 Psest_2079 Predicted permeases 0.51 Psest_3451 tRNA (uracil-5-)-methyltransferase low > 67
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_2454 Protein of unknown function DUF81 0.47 Psyr_4287 tRNA (uracil-5-)-methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_2454 Protein of unknown function DUF81 0.47 Psyr_4287 tRNA (uracil-5-)-methyltransferase low > 86
Pseudomonas sp. S08-1 0.26 OH686_03525 hypothetical protein 0.48 OH686_16060 tRNA (uracil(54)-C(5))-methyltransferase low > 80
Pseudomonas putida KT2440 0.25 PP_0487 conserved membrane protein of unknown function 0.49 PP_4654 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 96
Dechlorosoma suillum PS 0.25 Dsui_3484 putative permease 0.47 Dsui_2239 tRNA (uracil-5-)-methyltransferase low > 51
Acinetobacter radioresistens SK82 0.24 MPMX26_02777 putative membrane transporter protein YfcA 0.53 MPMX26_01714 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 36

Not shown: 27 genomes with orthologs for EX31_RS19675 only; 1 genomes with orthologs for EX31_RS14140 only