Conservation of cofitness between EX31_RS22280 and EX31_RS06335 in Rahnella sp. WP5

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS22280 7-cyano-7-deazaguanine synthase QueC 1.0 EX31_RS06335 transcriptional regulator TyrR 0.55 12
Serratia liquefaciens MT49 0.88 IAI46_05045 7-cyano-7-deazaguanine synthase QueC 0.84 IAI46_13470 transcriptional regulator TyrR low > 86
Pantoea sp. MT58 0.83 IAI47_14620 7-cyano-7-deazaguanine synthase QueC 0.77 IAI47_09440 transcriptional regulator TyrR low > 76
Escherichia coli Nissle 1917 0.83 ECOLIN_RS02660 7-cyano-7-deazaguanine synthase QueC 0.71 ECOLIN_RS07945 transcriptional regulator TyrR — —
Pectobacterium carotovorum WPP14 0.83 HER17_RS15815 7-cyano-7-deazaguanine synthase QueC 0.74 HER17_RS09575 transcriptional regulator TyrR low > 75
Escherichia coli ECOR27 0.83 NOLOHH_01230 queC 7-cyano-7-deazaguanine synthase QueC 0.71 NOLOHH_20000 tyrR transcriptional regulator TyrR low > 75
Escherichia coli ECOR38 0.83 HEPCGN_06910 queC 7-cyano-7-deazaguanine synthase QueC 0.72 HEPCGN_25885 tyrR transcriptional regulator TyrR low > 87
Escherichia fergusonii Becca 0.83 EFB2_03613 7-cyano-7-deazaguanine synthase 0.71 EFB2_02604 Transcriptional regulatory protein TyrR low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.83 OHPLBJKB_03229 7-cyano-7-deazaguanine synthase 0.71 OHPLBJKB_02359 Transcriptional regulatory protein TyrR low > 73
Escherichia coli BW25113 0.82 b0444 ybaX predicted aluminum resistance protein (NCBI) 0.71 b1323 tyrR DNA-binding transcriptional dual regulator, tyrosine-binding (NCBI) low > 76
Dickeya dianthicola ME23 0.82 DZA65_RS06040 7-cyano-7-deazaguanine synthase QueC 0.74 DZA65_RS12910 transcriptional regulator TyrR low > 75
Dickeya dianthicola 67-19 0.82 HGI48_RS05715 7-cyano-7-deazaguanine synthase QueC 0.74 HGI48_RS12460 transcriptional regulator TyrR low > 71
Escherichia coli BL21 0.82 ECD_00396 7-cyano-7-deazaguanine (preQ0) synthase; queuosine biosynthesis 0.71 ECD_01300 aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase low > 61
Escherichia coli ECRC62 0.82 BNILDI_22645 queC 7-cyano-7-deazaguanine synthase QueC 0.71 BNILDI_18150 tyrR transcriptional regulator TyrR 0.60 66
Dickeya dadantii 3937 0.82 DDA3937_RS05670 7-cyano-7-deazaguanine synthase QueC 0.74 DDA3937_RS12390 transcriptional regulator TyrR low > 74
Escherichia coli ECRC102 0.82 NIAGMN_06350 queC 7-cyano-7-deazaguanine synthase QueC 0.72 NIAGMN_26475 tyrR transcriptional regulator TyrR — —
Escherichia coli ECRC100 0.82 OKFHMN_08295 queC 7-cyano-7-deazaguanine synthase QueC 0.72 OKFHMN_02305 tyrR transcriptional regulator TyrR low > 80
Escherichia coli ECRC98 0.82 JDDGAC_11950 queC 7-cyano-7-deazaguanine synthase QueC 0.72 JDDGAC_04850 tyrR transcriptional regulator TyrR low > 86
Escherichia coli ECRC99 0.82 KEDOAH_19670 queC 7-cyano-7-deazaguanine synthase QueC 0.72 KEDOAH_26470 tyrR transcriptional regulator TyrR — —
Escherichia coli ECRC101 0.82 MCAODC_27520 queC 7-cyano-7-deazaguanine synthase QueC 0.72 MCAODC_15965 tyrR transcriptional regulator TyrR low > 87
Enterobacter sp. TBS_079 0.82 MPMX20_01035 7-cyano-7-deazaguanine synthase 0.72 MPMX20_02454 Transcriptional regulatory protein TyrR low > 85
Klebsiella michiganensis M5al 0.82 BWI76_RS06560 7-cyano-7-deazaguanine synthase QueC 0.72 BWI76_RS12485 TyrR family transcriptional regulator low > 92
Enterobacter asburiae PDN3 0.81 EX28DRAFT_2526 queuosine biosynthesis protein QueC 0.71 EX28DRAFT_0994 Transcriptional regulator of aromatic amino acids metabolism low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.81 GFF4360 Queuosine Biosynthesis QueC ATPase 0.72 GFF2679 Transcriptional repressor protein TyrR low > 78
Erwinia tracheiphila SCR3 0.80 LU632_RS18310 queC 7-cyano-7-deazaguanine synthase QueC 0.74 LU632_RS11530 tyrR transcriptional regulator TyrR low > 74
Pseudomonas fluorescens FW300-N2E3 0.74 AO353_22170 7-cyano-7-deazaguanine synthase 0.42 AO353_18590 AAA family ATPase low > 101
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_1527 Queuosine Biosynthesis QueC ATPase 0.42 Pf1N1B4_3567 Phenylalanine hydroxylase transcriptional activator PhhR low > 87
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_3734 Queuosine Biosynthesis QueC ATPase 0.41 Pf6N2E2_2629 Phenylalanine hydroxylase transcriptional activator PhhR low > 103
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_06875 7-cyano-7-deazaguanine synthase QueC 0.52 CSW01_06605 transcriptional regulator TyrR low > 62
Shewanella amazonensis SB2B 0.68 Sama_1826 ExsB protein (RefSeq) 0.48 Sama_2220 transcriptional regulatory protein TyrR (RefSeq) low > 62
Shewanella loihica PV-4 0.68 Shew_2062 exsB protein (RefSeq) 0.48 Shew_1437 transcriptional regulator, TyrR (RefSeq) — —
Shewanella oneidensis MR-1 0.67 SO2503 exsB exsB protein (NCBI ptt file) 0.49 SO1669 tyrR transcriptional regulatory protein TyrR (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.67 Shewana3_2164 queuosine biosynthesis protein QueC (RefSeq) 0.49 Shewana3_2779 transcriptional regulator, TyrR (RefSeq) low > 73
Desulfovibrio vulgaris Hildenborough JW710 0.38 DVU2659 exsB protein (TIGR) 0.24 DVU0569 flrA sigma-54 dependent transcriptional regulator (TIGR) low > 55
Pseudomonas stutzeri RCH2 0.30 Psest_1506 queuosine biosynthesis protein QueC 0.40 Psest_0782 Transcriptional regulator of aromatic amino acids metabolism low > 67
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_18070 7-cyano-7-deazaguanine synthase 0.42 AO356_03970 AAA family ATPase low > 104
Pseudomonas sp. S08-1 0.29 OH686_19180 queuosine biosynthesis protein QueC 0.42 OH686_21240 Phenylalanine hydroxylase transcriptional activator PhhR low > 80
Pseudomonas sp. RS175 0.29 PFR28_03403 7-cyano-7-deazaguanine synthase 0.42 PFR28_00803 Transcriptional regulatory protein TyrR low > 88
Pseudomonas simiae WCS417 0.29 PS417_22400 7-cyano-7-deazaguanine synthase 0.41 PS417_19895 ATPase AAA low > 88
Pseudomonas fluorescens SBW25 0.29 PFLU_RS24040 7-cyano-7-deazaguanine synthase QueC 0.41 PFLU_RS21865 sigma-54-dependent phenylalanine hydroxylase transcriptional regulator PhhR low > 109
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS24040 7-cyano-7-deazaguanine synthase QueC 0.41 PFLU_RS21865 sigma-54-dependent phenylalanine hydroxylase transcriptional regulator PhhR low > 109
Pseudomonas putida KT2440 0.29 PP_1226 pre-queuosine 0 synthase 0.40 PP_4489 sigma-54 dependent transcriptional regulator low > 96
Pseudomonas syringae pv. syringae B728a 0.28 Psyr_1419 preQ(0) biosynthesis protein QueC 0.38 Psyr_3574 Helix-turn-helix, Fis-type low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.28 Psyr_1419 preQ(0) biosynthesis protein QueC 0.38 Psyr_3574 Helix-turn-helix, Fis-type low > 86
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_1862 Queuosine Biosynthesis QueC ATPase 0.41 PfGW456L13_4393 Phenylalanine hydroxylase transcriptional activator PhhR low > 87
Alteromonas macleodii MIT1002 0.26 MIT1002_01263 7-cyano-7-deazaguanine synthase 0.50 MIT1002_01147 Transcriptional regulatory protein TyrR low > 70
Azospirillum sp. SherDot2 0.25 MPMX19_00425 7-cyano-7-deazaguanine synthase 0.33 MPMX19_06098 Transcriptional regulatory protein TyrR low > 112

Not shown: 47 genomes with orthologs for EX31_RS22280 only; 1 genomes with orthologs for EX31_RS06335 only