Conservation of cofitness between ECD_01018 and ECD_04038 in Escherichia coli BL21

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_01018 proline:sodium symporter 1.0 ECD_04038 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase 0.37 42
Escherichia coli ECRC62 1.00 BNILDI_19660 putP sodium/proline symporter PutP 1.00 BNILDI_06965 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 75
Escherichia coli ECOR27 1.00 NOLOHH_21495 putP sodium/proline symporter PutP 1.00 NOLOHH_04525 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 75
Escherichia coli ECRC102 1.00 NIAGMN_23740 putP sodium/proline symporter PutP 1.00 NIAGMN_10110 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Escherichia coli BW25113 1.00 b1015 putP proline:sodium symporter (NCBI) 1.00 b4171 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) low > 76
Escherichia coli ECOR38 1.00 HEPCGN_23540 putP sodium/proline symporter PutP 1.00 HEPCGN_10490 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 87
Escherichia coli ECRC98 1.00 JDDGAC_08205 putP sodium/proline symporter PutP 1.00 JDDGAC_15900 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Escherichia coli ECRC99 1.00 KEDOAH_23150 putP sodium/proline symporter PutP 1.00 KEDOAH_15895 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02651 Sodium/proline symporter 1.00 OHPLBJKB_03871 tRNA dimethylallyltransferase — —
Escherichia coli ECRC100 1.00 OKFHMN_04595 putP sodium/proline symporter PutP 1.00 OKFHMN_12260 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 80
Escherichia coli ECRC101 1.00 MCAODC_23980 putP sodium/proline symporter PutP 1.00 MCAODC_02775 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 87
Escherichia coli Nissle 1917 1.00 ECOLIN_RS05300 sodium/proline symporter PutP 1.00 ECOLIN_RS24225 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 55
Escherichia fergusonii Becca 1.00 EFB2_03065 Sodium/proline symporter 1.00 EFB2_04364 tRNA dimethylallyltransferase low > 86
Klebsiella michiganensis M5al 0.96 BWI76_RS10800 sodium:proline symporter 0.93 BWI76_RS02530 tRNA dimethylallyltransferase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.94 GFF3303 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter 0.90 GFF824 tRNA dimethylallyltransferase (EC 2.5.1.75) low > 78
Enterobacter asburiae PDN3 0.93 EX28DRAFT_1910 sodium/proline symporter 0.93 EX28DRAFT_3368 tRNA dimethylallyltransferase low > 76
Enterobacter sp. TBS_079 0.92 MPMX20_01703 Sodium/proline symporter 0.93 MPMX20_00452 tRNA dimethylallyltransferase low > 85
Pantoea sp. MT58 0.84 IAI47_08205 sodium/proline symporter PutP 0.84 IAI47_02585 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 76
Serratia liquefaciens MT49 0.81 IAI46_15740 sodium/proline symporter PutP 0.83 IAI46_01620 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 86
Dickeya dianthicola 67-19 0.80 HGI48_RS20260 sodium/proline symporter PutP 0.77 HGI48_RS18550 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 71
Dickeya dianthicola ME23 0.80 DZA65_RS21305 sodium/proline symporter PutP 0.77 DZA65_RS19685 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 75
Dickeya dadantii 3937 0.80 DDA3937_RS20120 sodium/proline symporter PutP 0.77 DDA3937_RS18615 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 74
Rahnella sp. WP5 0.80 EX31_RS09415 sodium/proline symporter PutP 0.81 EX31_RS08825 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 89
Erwinia tracheiphila SCR3 0.80 LU632_RS13735 putP sodium/proline symporter PutP 0.79 LU632_RS02050 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 74
Pectobacterium carotovorum WPP14 0.79 HER17_RS01105 sodium/proline symporter PutP 0.84 HER17_RS02580 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 75
Pseudomonas putida KT2440 0.76 PP_4946 sodium/L-proline transporter 0.59 PP_4895 tRNA dimethylallyltransferase low > 96
Pseudomonas fluorescens GW456-L13 0.76 PfGW456L13_221 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter 0.62 PfGW456L13_155 tRNA dimethylallyltransferase (EC 2.5.1.75) low > 87
Pseudomonas simiae WCS417 0.76 PS417_02180 proline:sodium symporter PutP 0.60 PS417_02485 tRNA delta(2)-isopentenylpyrophosphate transferase low > 88
Pseudomonas fluorescens SBW25-INTG 0.75 PFLU_RS02235 sodium/proline symporter PutP 0.60 PFLU_RS02565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 109
Pseudomonas fluorescens SBW25 0.75 PFLU_RS02235 sodium/proline symporter PutP 0.60 PFLU_RS02565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 109
Pseudomonas fluorescens FW300-N1B4 0.75 Pf1N1B4_1487 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter 0.62 Pf1N1B4_1413 tRNA dimethylallyltransferase (EC 2.5.1.75) — —
Pseudomonas stutzeri RCH2 0.75 Psest_3075 sodium/proline symporter 0.60 Psest_0682 tRNA dimethylallyltransferase — —
Pseudomonas sp. S08-1 0.74 OH686_03775 sodium/proline symporter 0.58 OH686_09475 tRNA dimethylallyltransferase low > 80
Pseudomonas syringae pv. syringae B728a 0.74 Psyr_0507 Na+/solute symporter 0.61 Psyr_0571 tRNA isopentenyltransferase 0.28 36
Pseudomonas syringae pv. syringae B728a ΔmexB 0.74 Psyr_0507 Na+/solute symporter 0.61 Psyr_0571 tRNA isopentenyltransferase low > 86
Pseudomonas fluorescens FW300-N2E3 0.73 AO353_12815 proline:sodium symporter PutP 0.62 AO353_13140 tRNA dimethylallyltransferase low > 101
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_09010 proline:sodium symporter PutP 0.62 AO356_08660 tRNA dimethylallyltransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.73 Pf6N2E2_3684 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter 0.62 Pf6N2E2_3615 tRNA dimethylallyltransferase (EC 2.5.1.75) — —
Pseudomonas sp. RS175 0.73 PFR28_05054 Sodium/proline symporter 0.61 PFR28_05120 tRNA dimethylallyltransferase low > 88
Acinetobacter radioresistens SK82 0.66 MPMX26_01468 Sodium/proline symporter 0.41 MPMX26_01208 tRNA dimethylallyltransferase — —
Shewanella loihica PV-4 0.50 Shew_2435 sodium/proline symporter (RefSeq) 0.62 Shew_0565 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.50 Sama_2177 sodium/proline symporter (RefSeq) 0.61 Sama_3026 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) — —
Kangiella aquimarina DSM 16071 0.49 B158DRAFT_2252 sodium/proline symporter 0.59 B158DRAFT_1951 tRNA dimethylallyltransferase low > 40
Shewanella sp. ANA-3 0.49 Shewana3_1451 sodium/proline symporter (RefSeq) 0.62 Shewana3_0596 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) — —
Alteromonas macleodii MIT1002 0.47 MIT1002_01275 Proline permease 0.57 MIT1002_03789 tRNA dimethylallyltransferase — —
Fusobacterium nucleatum SB010 0.42 HUW76_00545 sodium/proline symporter PutP 0.26 HUW76_01190 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 35
Vibrio cholerae E7946 ATCC 55056 0.42 CSW01_19440 sodium/proline symporter PutP 0.72 CSW01_01830 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 62
Marinobacter adhaerens HP15 0.39 HP15_2205 sodium/solute symporter 0.59 HP15_2500 tRNA delta(2)-isopentenylpyrophosphate transferase — —
Bifidobacterium breve UCC2003 0.32 BBR_RS10535 sodium/proline symporter 0.25 BBR_RS16565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —

Not shown: 2 genomes with orthologs for ECD_01018 only; 52 genomes with orthologs for ECD_04038 only