Conservation of cofitness between ECD_00806 and ECD_02658 in Escherichia coli BL21

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00806 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a 1.0 ECD_02658 UPF0382 family inner membrane protein 0.38 41
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02871 D-alanyl-D-alanine carboxypeptidase DacC 1.00 OHPLBJKB_00924 hypothetical protein low > 73
Escherichia coli BW25113 1.00 b0839 dacC D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) 1.00 b2807 ygdD conserved inner membrane protein (NCBI) low > 76
Escherichia coli ECRC62 1.00 BNILDI_20670 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 BNILDI_10510 ygdD UPF0382 inner membrane protein YgdD low > 75
Escherichia coli ECRC102 1.00 NIAGMN_04085 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 NIAGMN_17895 ygdD UPF0382 inner membrane protein YgdD — —
Escherichia coli ECRC99 1.00 KEDOAH_21870 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 KEDOAH_08005 ygdD UPF0382 inner membrane protein YgdD — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS04460 serine-type D-Ala-D-Ala carboxypeptidase 1.00 ECOLIN_RS15645 DUF423 domain-containing protein — —
Escherichia coli ECOR27 1.00 NOLOHH_22410 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 NOLOHH_12005 ygdD UPF0382 inner membrane protein YgdD low > 75
Escherichia coli ECRC98 1.00 JDDGAC_09675 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 JDDGAC_23790 ygdD UPF0382 inner membrane protein YgdD low > 86
Escherichia coli ECOR38 1.00 HEPCGN_01990 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 HEPCGN_19380 ygdD DUF423 domain-containing protein low > 87
Escherichia coli ECRC101 1.00 MCAODC_25255 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 MCAODC_10650 ygdD UPF0382 inner membrane protein YgdD low > 87
Escherichia coli ECRC100 1.00 OKFHMN_06040 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 OKFHMN_20125 ygdD UPF0382 inner membrane protein YgdD low > 80
Escherichia fergusonii Becca 1.00 EFB2_03267 D-alanyl-D-alanine carboxypeptidase DacC 1.00 EFB2_01110 hypothetical protein low > 86
Enterobacter asburiae PDN3 0.90 EX28DRAFT_2127 D-alanyl-D-alanine carboxypeptidase 0.95 EX28DRAFT_2882 Uncharacterized small membrane protein low > 76
Enterobacter sp. TBS_079 0.90 MPMX20_01477 D-alanyl-D-alanine carboxypeptidase DacC 0.96 MPMX20_03670 hypothetical protein low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.86 GFF744 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.93 GFF4864 COG2363 low > 78
Klebsiella michiganensis M5al 0.85 BWI76_RS09145 serine-type D-Ala-D-Ala carboxypeptidase 0.94 BWI76_RS22950 membrane protein low > 92
Pantoea sp. MT58 0.75 IAI47_13090 serine hydrolase 0.79 IAI47_04030 DUF423 domain-containing protein low > 76
Pectobacterium carotovorum WPP14 0.72 HER17_RS12545 serine hydrolase 0.84 HER17_RS16410 DUF423 domain-containing protein low > 75
Serratia liquefaciens MT49 0.71 IAI46_08285 serine hydrolase 0.82 IAI46_20335 DUF423 domain-containing protein low > 86
Dickeya dadantii 3937 0.68 DDA3937_RS09420 serine hydrolase 0.72 DDA3937_RS05055 DUF423 domain-containing protein low > 74
Dickeya dianthicola 67-19 0.68 HGI48_RS09435 serine hydrolase 0.66 HGI48_RS05055 DUF423 domain-containing protein low > 71
Dickeya dianthicola ME23 0.67 DZA65_RS09745 D-alanyl-D-alanine carboxypeptidase 0.67 DZA65_RS05395 DUF423 domain-containing protein low > 75
Rahnella sp. WP5 0.65 EX31_RS09695 D-alanyl-D-alanine carboxypeptidase 0.76 EX31_RS13105 DUF423 domain-containing protein low > 89
Pseudomonas putida KT2440 0.42 PP_4803 D-alanyl-D-alanine carboxypeptidase 0.32 PP_5106 conserved inner membrane protein low > 96
Pseudomonas sp. RS175 0.42 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC 0.27 PFR28_04254 hypothetical protein low > 88
Pseudomonas fluorescens SBW25 0.42 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.30 PFLU_RS28430 DUF423 domain-containing protein low > 109
Pseudomonas fluorescens FW300-N2C3 0.42 AO356_15330 D-alanyl-D-alanine carboxypeptidase 0.27 AO356_13365 hypothetical protein low > 104
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.30 PFLU_RS28430 DUF423 domain-containing protein low > 109
Pseudomonas fluorescens FW300-N2E2 0.42 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.27 Pf6N2E2_4588 COG2363 low > 103
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.27 Pf1N1B4_2329 COG2363 — —
Pseudomonas simiae WCS417 0.41 PS417_24705 D-alanyl-D-alanine carboxypeptidase 0.30 PS417_26785 membrane protein low > 88
Pseudomonas stutzeri RCH2 0.41 Psest_0516 D-alanyl-D-alanine carboxypeptidase 0.30 Psest_0265 Uncharacterized small membrane protein low > 67
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_06455 D-alanyl-D-alanine carboxypeptidase 0.27 AO353_08225 hypothetical protein low > 101
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.27 PfGW456L13_998 COG2363 — —
Pseudomonas sp. S08-1 0.41 OH686_09300 D-alanyl-D-alanine carboxypeptidase 0.32 OH686_14275 hypothetical regulator low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.41 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.30 Psyr_4742 Protein of unknown function DUF423 low > 86
Pseudomonas syringae pv. syringae B728a 0.41 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.30 Psyr_4742 Protein of unknown function DUF423 — —
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein 0.22 ABZR86_RS21295 DUF423 domain-containing protein — —
Rhodanobacter denitrificans MT42 0.40 LRK55_RS06235 D-alanyl-D-alanine carboxypeptidase family protein 0.20 LRK55_RS14235 DUF423 domain-containing protein — —
Rhodanobacter denitrificans FW104-10B01 0.40 LRK54_RS06490 D-alanyl-D-alanine carboxypeptidase 0.20 LRK54_RS14520 DUF423 domain-containing protein low > 59
Marinobacter adhaerens HP15 0.39 HP15_608 serine-type D-Ala-D-Ala carboxypeptidase 0.25 HP15_3276 membrane protein containing DUF423 — —
Castellaniella sp019104865 MT123 0.36 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein 0.19 ABCV34_RS01610 DUF423 domain-containing protein low > 48
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS21530 cytochrome C550 0.29 HSERO_RS06075 membrane protein low > 78

Not shown: 30 genomes with orthologs for ECD_00806 only; 13 genomes with orthologs for ECD_02658 only